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Updated: Jul 13, 2026

Cell Type-specific Gene Expression Profiling in the Mouse Liver
Published on: September 17, 2019
The farnesoid X receptor induces fetuin-B gene expression in human hepatocytes
Takeshi Murakami1, Robert Walczak, Sandrine Caron
1Tokyo New Research Laboratories I, Pharmaceutical Division, Kowa Company Ltd, 2-17-43 Noguchicho, Higashimurayama, Tokyo, Japan.
Abstract:
FXR (farnesoid X receptor), a nuclear receptor activated by BAs (bile acids), is a key factor in the regulation of BA, lipid and carbohydrate metabolism. The recent development of synthetic FXR agonists and knockout mouse models has accelerated the discovery of FXR target genes. In the present study, we identify human fetuin-B as a novel FXR target gene. Treatment with FXR agonists increased fetuin-B expression in human primary hepatocytes and in the human hepatoma HepG2 cell line. In contrast, fetuin-B expression was not responsive to FXR agonist treatment in murine primary hepatocytes. Fetuin-B induction by FXR agonist was abolished upon FXR knockdown by siRNA (small interfering RNA). In addition to the previously described P1 promoter, we show that the human fetuin-B gene is also transcribed from an alternative promoter, termed P2. Transcription via the P2 promoter was induced by FXR agonist treatment, whereas P1 promoter activity was not sensitive to FXR agonist treatment. Two putative FXR-response elements [IR-1 (inverted repeat-1)] were identified in the region -1.6 kb upstream of the predicted P2 transcriptional start site. Both motifs bound FXR-RXR (retinoid X receptor) complexes in vitro and were activated by FXR in transient transfection reporter assays. Mutations in the IR-1 sites abolished FXR-RXR binding and activation. Taken together, these results identify human fetuin-B as a new FXR target gene in human hepatocytes.
Insights
Human fetuin-B is a newly discovered target gene of the farnesoid X receptor (FXR). FXR activation increases fetuin-B expression in human liver cells, highlighting a new role for FXR in metabolic regulation.
Area of Science:
- Molecular Endocrinology
- Hepatology
- Metabolic Regulation
Background:
- The farnesoid X receptor (FXR) is a nuclear receptor crucial for regulating bile acid, lipid, and carbohydrate metabolism.
- Recent advancements in synthetic FXR agonists and knockout models facilitate the identification of FXR target genes.
Purpose of the Study:
- To identify novel FXR target genes.
- To investigate the role of FXR in regulating human fetuin-B expression.
Main Methods:
- Treatment of human primary hepatocytes and HepG2 cells with FXR agonists.
- FXR knockdown using siRNA.
- Analysis of alternative promoter usage (P1 and P2) in the human fetuin-B gene.
- Identification and functional analysis of putative FXR-response elements (IR-1) using in vitro binding assays and transient transfection reporter assays.
Main Results:
- FXR agonists significantly increased human fetuin-B expression in human hepatocytes and HepG2 cells.
- FXR knockdown abolished FXR agonist-induced fetuin-B expression.
- Human fetuin-B is transcribed from an alternative P2 promoter, which is induced by FXR agonists.
- Two IR-1 motifs upstream of the P2 promoter were identified as functional FXR-response elements, mediating FXR-RXR complex binding and activation.
Conclusions:
- Human fetuin-B is a novel FXR target gene in human hepatocytes.
- FXR regulates human fetuin-B expression primarily through the P2 promoter via specific IR-1 response elements.
- This finding expands the understanding of FXR's regulatory network in liver metabolism.
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