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Updated: Jul 13, 2026

Studying RNA Interactors of Protein Kinase RNA-Activated during the Mammalian Cell Cycle
Published on: March 5, 2019
West Nile virus-induced interferon production is mediated by the double-stranded RNA-dependent protein kinase PKR
Felicia D Gilfoy1, Peter W Mason
1Department of Pathology, University of Texas Medical Branch, 301 University Boulevard, Galveston, TX 77555-0436, USA.
Abstract:
Cells carry a variety of molecules, referred to as pathogen recognition receptors (PRRs), which are able to sense invading pathogens. Interaction of PRRs with viral compounds instigates a signaling pathway(s), resulting in the activation of genes, including those for type I interferon (IFN), which are critical for an effective antiviral response. Here we demonstrate that the double-stranded RNA (dsRNA)-dependent protein kinase PKR, which has been shown to function as a PRR in cells treated with the dsRNA mimetic poly(I:C), serves as a PRR in West Nile virus (WNV)-infected cells. Evidence for PKR's role as a PRR was obtained from both human and murine cells. Using mouse embryonic fibroblasts (MEFs), we demonstrated that PKR gene knockout, posttranscriptional gene silencing of PKR mRNA using small interfering RNA (siRNA), and chemical inhibition of PKR function all interfered with IFN synthesis following WNV infection. In three different human cell lines, siRNA knockdown and chemical inhibition of PKR blocked WNV-induced IFN synthesis. Using the same approaches, we demonstrated that PKR was not necessary for Sendai virus-induced IFN synthesis, suggesting that PKR is particularly important for recognition of WNV infection. Taken together, our data suggest that PKR could serve as a PRR for recognition of WNV infection.
Insights
The protein kinase PKR acts as a pathogen recognition receptor (PRR) in West Nile virus (WNV) infections. This discovery is crucial for understanding antiviral responses and developing new WNV treatments.
Area of Science:
- Immunology
- Virology
- Molecular Biology
Background:
- Cells utilize pathogen recognition receptors (PRRs) to detect pathogens.
- PRR activation triggers signaling pathways, leading to the production of type I interferons (IFNs), essential for antiviral defense.
Purpose of the Study:
- To investigate the role of double-stranded RNA (dsRNA)-dependent protein kinase PKR as a PRR in West Nile virus (WNV) infection.
- To determine if PKR is specifically involved in recognizing WNV, unlike other viruses.
Main Methods:
- Utilized mouse embryonic fibroblasts (MEFs) with PKR gene knockout, siRNA-mediated knockdown, and chemical inhibition.
- Tested PKR's function in human cell lines using similar knockdown and inhibition techniques.
- Assessed the impact of PKR manipulation on IFN synthesis following WNV and Sendai virus infections.
Main Results:
- PKR knockout, knockdown, or inhibition significantly impaired IFN synthesis in WNV-infected mouse and human cells.
- PKR was not essential for IFN synthesis in response to Sendai virus infection.
- These findings indicate a specific role for PKR in WNV recognition.
Conclusions:
- PKR functions as a pathogen recognition receptor (PRR) during West Nile virus infection.
- PKR plays a critical role in initiating the interferon response specifically against WNV.
- This suggests PKR as a potential target for therapeutic strategies against WNV.
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