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Updated: Jul 13, 2026

Phosphoproteomic Strategy for Profiling Osmotic Stress Signaling in Arabidopsis
Published on: June 25, 2020
Phosphorylation sites of Arabidopsis MAP kinase substrate 1 (MKS1)
Mikael B Caspersen1, Jin-Long Qiu, Xumin Zhang
1Enzyme and Protein Chemistry, BioCentrum-DTU, Søltofts Plads Building 224, DK-2800 Kgs. Lyngby, Denmark.
Abstract:
The Arabidopsis MAP kinase 4 (MPK4) substrate MKS1 was expressed in Escherichia coli and purified, full-length, 6x histidine (His)-tagged MKS1 was phosphorylated in vitro by hemagglutinin (HA)-tagged MPK4 immuno-precipitated from plants. MKS1 phosphorylation was initially verified by electrophoresis and gel-staining with ProQ Diamond and the protein was digested by either trypsin or chymotrypsin for maximum sequence coverage to facilitate identification of phosphorylated positions. Prior to analysis by mass spectrometry, samples were either desalted, passed over TiO(2) or both for improved phosphopeptide detection. As MAP kinases generally phosphorylate serine or threonine followed by proline (Ser/Thr-Pro), theoretical masses of potentially phosphorylated peptides were calculated and mass spectrometric peaks matching these masses were fragmented and searched for a neutral-loss signal at approximately 98 Da indicative of phosphorylation. Additionally, mass spectrometric peaks present in the MPK4-treated MKS1, but not in the control peptide map of untreated MKS1, were fragmented. Fragmentation spectra were subjected to a MASCOT database search which identified three of the twelve Ser-Pro serine residues (Ser72, Ser108, Ser120) in the phosphorylated form.
Insights
Arabidopsis MAP kinase 4 (MPK4) phosphorylates MKS1 at specific sites. This study identified three phosphorylation sites (Ser72, Ser108, Ser120) on MKS1 using mass spectrometry, advancing our understanding of plant signaling pathways.
Area of Science:
- Plant molecular biology
- Signal transduction pathways
- Protein phosphorylation
Background:
- MPK4 is a MAP kinase involved in plant defense.
- MKS1 is a known substrate of MPK4.
- Understanding precise phosphorylation sites is crucial for dissecting signaling networks.
Purpose of the Study:
- To identify the specific phosphorylation sites on MKS1 by MPK4.
- To characterize the in vitro phosphorylation of MKS1 by MPK4.
- To provide detailed molecular insights into MPK4-MKS1 interaction.
Main Methods:
- Expression and purification of histidine-tagged MKS1 in E. coli.
- In vitro phosphorylation of MKS1 by immunoprecipitated HA-tagged MPK4.
- Peptide mapping using trypsin/chymotrypsin digestion, followed by mass spectrometry (MS).
- Enrichment of phosphopeptides using TiO(2) chromatography and desalting.
- MS/MS fragmentation and database searching (MASCOT) to identify phosphorylated residues.
Main Results:
- MPK4 successfully phosphorylated MKS1 in vitro.
- Phosphorylation was confirmed using ProQ Diamond staining and MS.
- Three specific serine residues (Ser72, Ser108, Ser120) within Ser/Thr-Pro motifs were identified as phosphorylated sites on MKS1.
- Analysis revealed distinct phosphopeptides in MPK4-treated MKS1 compared to controls.
Conclusions:
- MPK4 directly phosphorylates MKS1 at Ser72, Ser108, and Ser120.
- These findings precisely map the MPK4 phosphorylation sites on MKS1.
- This detailed molecular information contributes to understanding MPK4-mediated signaling in Arabidopsis.
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