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A Complete Pipeline for Isolating and Sequencing MicroRNAs, and Analyzing Them Using Open Source Tools
Published on: August 21, 2019
Protocols for expression and functional analysis of viral microRNAs
1Center for Virology and Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, USA.
Methods in Enzymology
|August 28, 2007
Summary
Viral microRNAs (miRNAs) are small RNA molecules that regulate gene expression. This review details methods for studying viral miRNA function by expressing them in uninfected cells.
Area of Science:
- Molecular Biology
- Virology
- Genetics
Background:
- MicroRNAs (miRNAs) are endogenous small RNA molecules regulating gene expression post-transcriptionally.
- Numerous DNA viruses encode miRNAs, potentially to control viral and host gene expression.
- The function of most viral miRNAs remains largely unknown, despite their prevalence.
Purpose of the Study:
- To review techniques for expressing viral microRNAs (miRNAs) in uninfected cells.
- To enable functional assessment of viral miRNAs as exogenous molecules.
- To clarify the roles of viral miRNAs, particularly those from herpesviruses.
Main Methods:
- Describing methods to achieve exogenous expression of viral miRNAs.
- Outlining techniques for validating viral miRNA expression and function.
- Focusing on herpesviruses as a model for viral miRNA studies.
Main Results:
- Viral miRNAs can be expressed exogenously in appropriate cell types.
- This exogenous expression allows for functional studies.
- Herpesviruses extensively utilize miRNA expression during infection.
Conclusions:
- Exogenous expression of viral miRNAs is a key tool for functional analysis.
- Understanding viral miRNA function is crucial, especially for herpesviruses.
- This review provides a methodological framework for viral miRNA research.
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MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
MicroRNAs
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA ends...
MicroRNAs
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA ends...

