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Updated: Jul 12, 2026

Study of the DNA Damage Checkpoint using Xenopus Egg Extracts
Published on: November 5, 2012
Non-catalytic function for ATR in the checkpoint response
Troy D McSherry1, Ana A Kitazono, Ali Javaheri
1Center for Molecular Oncology, University of Chicago, Chicago, Illinois, USA.
Abstract:
The ATR family of checkpoint kinases is essential for an appropriate response to genomic insults in eukaryotes. Included in this family are Mei-41 in Drosophila, Mec1 inS. cerevisiae, Rad3 in S. pombe, and ATR in vertebrates. These large kinases phosphorylateand modify multiple cell cycle and checkpoint factors, leading to cell cycle arrest, DNA repair, and induction of apoptosis. The catalytic domain of all ATR family members comprises only a fraction of the total protein. Here, we show that the non-catalytic portion of ATR has a conserved function in the checkpoint response. Expression of either wild type or various kinase defective forms of Xenopus ATR (XATR) in S. cerevisiae mec1 mutants suppresses the checkpoint defect and induces a DNA damage dependent mitotic cell cycle arrest. This suppression requires the presence of yeast Ddc2 and Rad9 but functions independently of Rad9 modification and Rad53 activation. Our results indicate that XATR is not functioning through the established mitotic checkpoint pathways. Instead, we find that the XATR suppression of the mec1 mutant checkpoint defect requires the spindle checkpoint factors Mad1 and Mad2, suggesting a role for XATR in the spindle assembly checkpoint. Finally, we show that a yeast strain expressing a truncated, kinase domain deleted form of mec1 from the endogenous locus is partially checkpoint proficient and induces a mitotic cell cycle arrest in a Mad2 dependent manner. Thus, the link between the non-catalytic region of the ATR kinase family and the spindle checkpoint pathway is conserved.
Insights
The non-catalytic portion of ATR kinases is crucial for DNA damage response. This conserved function involves the spindle assembly checkpoint, linking ATR to Mad1 and Mad2, independent of its catalytic activity.
Area of Science:
- Cell Biology
- Genetics
- Molecular Biology
Background:
- The ATR (Ataxia Telangiectasia and Rad3-related) kinase family is vital for eukaryotic DNA damage response.
- ATR kinases orchestrate cell cycle arrest, DNA repair, and apoptosis following genomic insults.
- The catalytic domain is a small part of these large kinases, suggesting non-catalytic regions have functions.
Purpose of the Study:
- To investigate the conserved function of the non-catalytic portion of ATR kinases.
- To determine the role of Xenopus ATR (XATR) in Saccharomyces cerevisiae mec1 mutants.
- To elucidate the specific checkpoint pathways involved in ATR's function.
Main Methods:
- Expression of wild-type and kinase-defective XATR in S. cerevisiae mec1 mutants.
- Analysis of checkpoint defects, cell cycle arrest, and dependence on specific yeast factors (Ddc2, Rad9, Rad53, Mad1, Mad2).
- Creation and analysis of a yeast strain with a truncated mec1 lacking the kinase domain.
Main Results:
- Xenopus ATR (XATR) suppressed the mec1 mutant checkpoint defect, inducing DNA damage-dependent mitotic arrest.
- Suppression required yeast Ddc2 and Rad9 but was independent of Rad9 modification and Rad53 activation.
- XATR-mediated suppression involved spindle checkpoint factors Mad1 and Mad2, suggesting a role in the spindle assembly checkpoint.
- A truncated mec1 mutant was partially checkpoint proficient and induced Mad2-dependent mitotic arrest.
Conclusions:
- The non-catalytic portion of ATR kinases has a conserved function in checkpoint control.
- ATR kinases are linked to the spindle assembly checkpoint pathway via their non-catalytic regions.
- This connection between ATR and the spindle checkpoint is conserved across species.
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