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Updated: Jul 12, 2026

A Method to Study the C924T Polymorphism of the Thromboxane A2 Receptor Gene
Published on: April 1, 2019
CYP2C9 and VKORC1 genetic polymorphism analysis might be necessary in patients with Factor V Leiden and prothrombin
Allen Leung1, Chih-Kang Huang, Riho Muto
1Molecular Pathology Laboratory, Department of Pathology, Montefiore Medical Center, Albert Einstein College of Medicine, Bronx, NY 10467, USA.
Insights
Genetic testing for CYP2C9 and VKORC1 variants is recommended for patients with Factor V Leiden or prothrombin gene mutations. This helps personalize warfarin dosing and reduce bleeding risks in hypercoagulable individuals.
Area of Science:
- Pharmacogenomics
- Thrombophilia
Background:
- Venous thromboembolism (VTE) affects approximately 1 in 1000 person-years, primarily in older adults.
- Factor V Leiden and prothrombin G20210A mutations are common inherited risk factors for hypercoagulability.
- Warfarin anticoagulant therapy necessitates regular monitoring via the international normalization ratio (INR).
Purpose of the Study:
- To investigate the necessity of CYP2C9 and VKORC1 genotyping in patients with inherited thrombophilia.
- To assess the prevalence of specific CYP2C9 and VKORC1 genotypes in individuals with Factor V Leiden and/or prothrombin G20210A mutations.
- To determine if genetic screening is warranted prior to warfarin initiation in this patient cohort.
Main Methods:
- Analysis of 35 patient samples for Factor V Leiden and prothrombin G20210A mutations.
- Genotyping for CYP2C9*2, CYP2C9*3, and VKORC1 (-1639 G>A) polymorphisms using the Invader assay.
- Correlation of genetic variants with potential warfarin dose adjustments and bleeding risks.
Main Results:
- 83% (29/35) of analyzed samples exhibited at least one of the target CYP2C9 or VKORC1 genotypes (CYP2C9*2 C/T, CYP2C9*3 A/C, VKORC1 (-1639) G/A, or VKORC1 (-1639) A/A).
- Specific genotypes (CYP2C9*2, CYP2C9*3, VKORC1*2) are associated with significantly reduced warfarin doses and increased bleeding risk.
- A high prevalence of relevant pharmacogenetic variants was observed in patients with inherited thrombophilia.
Conclusions:
- CYP2C9 and VKORC1 genotyping may be essential for patients with Factor V Leiden and/or prothrombin G20210A mutations.
- Personalized warfarin therapy based on pharmacogenetic profiles can mitigate risks associated with these mutations.
- Pre-treatment genetic screening can optimize warfarin management and improve patient safety.
Abstract:
The annual incidence of venous thromboembolism is approximately 117 per 100,000 persons or about 1 per 1000 person-years, with the majority of the disease occurring in the older age groups. Factor V Leiden gene (most common) and the prothrombin G20210A gene mutation are inherited mild to moderate risk factors for hypercoagulability. The anticoagulant warfarin requires close monitoring of the patient's prothrombin time, normalized as the international normalization ratio. Patients with either Cytochrome P-450 CYP2C9*2, CYP2C9*3, or VKORC1*2 genotype (c.-1639G>A) require significantly reduced doses, and are at a higher risk of serious bleeding. Thirty-five samples in total, 15 with Factor V Leiden, 18 with prothrombin G2021A mutation, and 2 with both were analyzed for 2C9*2, 2C9*3, and VKORC1 (-1639) allele variants by using the Invader CYP2C9 and VKORC1 polymorphism analysis kit. Eight with CYP2C9*2 C/T, 2 with CYP2C9*3 A/C, 5 with VKORC1 (-1639) A/A, and 22 with VKORC1 (-1639) G/A genotypes or 29 out of 35 (83%) samples analyzed were found with CYP2C9*2 C/T, CYP2C9*3 A/C, VKORC1 (-1639) G/A, or/and VKORC1 (-1639) A/A genotypes. CYP2C9*2 C/T, CYP2C9*3 A/C, VKORC1 (-1639) G/A genotyping might be necessary for patients with Factor V Leiden and/or prothrombin G2021A mutation before warfarin anticoagulant therapy.
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