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Determining the effective sample size of a parametric prior.
Satoshi Morita1, Peter F Thall, Peter Müller
1Department of Epidemiology and Health Care Research, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan. satoshi_morita@pbh.med.kyoto-u.ac.jp
We define and compute the effective sample size for parametric prior distributions in Bayesian models. This method quantizes prior influence, aiding in model selection and interpretation for researchers.
Area of Science:
- Statistics
- Bayesian Inference
- Computational Statistics
Background:
- Determining the influence of a parametric prior distribution in Bayesian modeling is crucial for model assessment.
- Existing methods for quantifying prior impact may not be universally applicable or easily interpretable.
- A robust measure of effective sample size (ESS) for priors is needed to standardize Bayesian analyses.
Purpose of the Study:
- To introduce a novel definition for the effective sample size of a parametric prior distribution within Bayesian models.
- To develop and present methods for calculating this effective sample size across diverse settings.
- To provide practical guidelines and demonstrate the application of the proposed method.
Main Methods:
- Constructing a vague prior and updating it to generate a sequence of posteriors for varying sample sizes.
- Defining a distance metric based on the curvature of the log-distributions to compare posteriors with the prior.
- Identifying the posterior that minimizes this distance to determine the effective sample size of the prior.
- Employing Monte Carlo simulation for numerical approximation when analytical computation is infeasible.
Main Results:
- A clear definition and computational framework for the effective sample size of parametric priors are established.
- The method is illustrated in standard Bayesian models, yielding intuitive results.
- Applications to non-standard settings demonstrate the method's versatility and robustness.
Conclusions:
- The proposed effective sample size provides a quantitative measure of a parametric prior's influence in Bayesian analysis.
- The developed methods, including numerical approximations, offer practical tools for researchers.
- This work facilitates a deeper understanding and more rigorous assessment of prior specifications in Bayesian modeling.
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