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Updated: Jul 12, 2026

Identification of Transcription Factor Regulators using Medium-Throughput Screening of Arrayed Libraries and a Dual-Luciferase-Based Reporter
Published on: March 27, 2020
Human TOB, an antiproliferative transcription factor, is a poly(A)-binding protein-dependent positive regulator of
Nader Ezzeddine1, Tsung-Cheng Chang, Wenmiao Zhu
1Department of Biochemistry and Molecular Biology, The University of Texas Medical School, Houston, Texas 77030, USA.
Abstract:
In mammalian cells, mRNA decay begins with deadenylation, which involves two consecutive phases mediated by the PAN2-PAN3 and the CCR4-CAF1 complexes, respectively. The regulation of the critical deadenylation step and its relationship with RNA-processing bodies (P-bodies), which are thought to be a site where poly(A)-shortened mRNAs get degraded, are poorly understood. Using the Tet-Off transcriptional pulsing approach to investigate mRNA decay in mouse NIH 3T3 fibroblasts, we found that TOB, an antiproliferative transcription factor, enhances mRNA deadenylation in vivo. Results from glutathione S-transferase pull-down and coimmunoprecipitation experiments indicate that TOB can simultaneously interact with the poly(A) nuclease complex CCR4-CAF1 and the cytoplasmic poly(A)-binding protein, PABPC1. Combining these findings with those from mutagenesis studies, we further identified the protein motifs on TOB and PABPC1 that are necessary for their interaction and found that interaction with PABPC1 is necessary for TOB's deadenylation-enhancing effect. Moreover, our immunofluorescence microscopy results revealed that TOB colocalizes with P-bodies, suggesting a role of TOB in linking deadenylation to the P-bodies. Our findings reveal a new mechanism by which the fate of mammalian mRNA is modulated at the deadenylation step by a protein that recruits poly(A) nuclease(s) to the 3' poly(A) tail-PABP complex.
Insights
The antiproliferative transcription factor TOB enhances mRNA deadenylation in mammalian cells. TOB links deadenylation to P-bodies by interacting with CCR4-CAF1 and PABPC1, modulating mRNA fate.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- mRNA decay is crucial for gene regulation, initiated by deadenylation.
- Deadenylation involves PAN2-PAN3 and CCR4-CAF1 complexes.
- The regulation of deadenylation and its link to P-bodies are not fully understood.
Purpose of the Study:
- To investigate the role of the antiproliferative transcription factor TOB in mRNA decay.
- To elucidate the mechanism by which TOB affects deadenylation.
- To explore the relationship between TOB, deadenylation, and P-bodies.
Main Methods:
- Tet-Off transcriptional pulsing in mouse NIH 3T3 fibroblasts.
- Glutathione S-transferase pull-down and coimmunoprecipitation assays.
- Mutagenesis studies and immunofluorescence microscopy.
Main Results:
- TOB enhances mRNA deadenylation in vivo.
- TOB interacts with both CCR4-CAF1 and PABPC1.
- Interaction with PABPC1 is essential for TOB's deadenylation-promoting activity.
- TOB colocalizes with P-bodies.
Conclusions:
- TOB acts as a novel regulator of mRNA deadenylation.
- TOB facilitates mRNA decay by recruiting poly(A) nucleases to the 3' poly(A) tail-PABP complex.
- TOB bridges deadenylation and P-bodies, influencing mRNA fate.
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