Related Experiment Video
Updated: Jul 11, 2026

Building Finite Element Models to Investigate Zebrafish Jaw Biomechanics
Published on: December 3, 2016
Data and model integration using JWS Online
Carel van Gend1, Riaan Conradie, Franco B du Preez
1Triple J Group for Molecular Cell Physiology, Department of Biochemistry, Stellenbosch University, Matieland 7602, South Africa.
Abstract:
Systems Biology requires a tight integration of experimental data and detailed computer models to obtain a quantitative understanding of the system under study. To facilitate this integration a standardization of data and model representation and storage is important. We illustrate here such an integration using JWS Online, the modeling tool developed in our group. We follow the approach of the Silicon Cell project for the construction and validation of kinetic models and discuss some issues with respect to storage of experimental data and models. The majority of the published kinetic models for biological systems have been developed for metabolic networks and this will be our focus in this manuscript. It is not our aim to present here an all encompassing method for data and model integration, but rather to present our work on this topic to start a discussion in which the different initiatives, methods and tools can be compared.
More Related Videos
05:18Quaternary Structure Modeling Through Chemical Cross-Linking Mass Spectrometry: Extending TX-MS Jupyter Reports
Published on: October 20, 2021
12:26Integrating Remote Sensing with Species Distribution Models; Mapping Tamarisk Invasions Using the Software for Assisted Habitat Modeling (SAHM)
Published on: October 11, 2016
Related Concept Videos
Data Reporting and Recording
¹H NMR Signal Integration: Overview
Clearance Models: Compartment Models
Design Example: Creating a Hydraulic Model of a Dam Spillway
Molecular Models
Three-Compartment Open Model