Borate binding to siderophores: structure and stability.
Wesley R Harris1, Shady A Amin, Frithjof C Küpper
1Department of Chemistry and Biochemistry, San Diego State University, San Diego, California 92182-1030, USA.
Journal of the American Chemical Society
|September 14, 2007
Summary
Certain siderophores bind boron, not just iron. This unexpected affinity, dependent on specific chemical groups, suggests roles in marine cell signaling and boron uptake.
Area of Science:
- Biochemistry
- Environmental Chemistry
- Microbiology
Background:
- Siderophores are bacterial iron chelators.
- Boron is essential in marine environments.
- Boron's biological roles are not fully understood.
Purpose of the Study:
- Investigate siderophore-boron interactions.
- Determine the structural requirements for boron binding.
- Explore potential biological functions of boron-siderophore complexes.
Main Methods:
- Electrospray ionization mass spectrometry (ESI-MS).
- Multinuclear Nuclear Magnetic Resonance (NMR) spectroscopy.
- Density Functional Theory (DFT) calculations.
- Measurement of boron binding constants.
Main Results:
- Siderophores with citrate or catecholate groups bind boron.
- Boron complexes with vibrioferrin, rhizoferrin, and petrobactin characterized.
- Significant boron binding constants measured at oceanic pH.
- Boron binding induces a distinct siderophore conformation.
Conclusions:
- Specific siderophores exhibit unexpected boron affinity.
- Boron-siderophore complexes may form in marine environments.
- Potential roles in biological boron uptake and cell signaling hypothesized.
- Conformational changes allow differentiation between iron and boron binding roles.
Related Concept Videos
Complexation Equilibria: Factors Influencing Stability of Complexes
In complexation reactions, metal cations are the electron pair acceptors, and the ligands are the electron pair donors. The stability of the metal complexes depends primarily on the complexing ability of the central metal ion and the nature of the ligands. Generally, the complexing ability of the metal ion depends on the size and charge of the ion. As the metal ion size increases, the stability of the metal complexes decreases, provided that the valency of the metal ion and the ligands remain...
Metal-Ligand Bonds
The hemoglobin in the blood, the chlorophyll in green plants, vitamin B-12, and the catalyst used in the manufacture of polyethylene all contain coordination compounds. Ions of the metals, especially the transition metals, are likely to form complexes.
In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...
In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...
Ligand Binding and Linkage
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence the...
The Equilibrium Binding Constant and Binding Strength
The equilibrium binding constant (Kb) quantifies the strength of a protein-ligand interaction. Kb can be calculated as follows when the reaction is at equilibrium:
The Equilibrium Binding Constant and Binding Strength
The equilibrium binding constant (Kb) quantifies the strength of a protein-ligand interaction. Kb can be calculated as follows when the reaction is at equilibrium:
Cooperative Allosteric Transitions
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...


