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Updated: Jul 11, 2026

Genotyping Single Nucleotide Polymorphisms in the Mitochondrial Genome by Pyrosequencing
Published on: February 10, 2023
Mitochondrial DNA fragments released through the permeability transition pore correspond to specific gene size
1Departamento de Bioquímica, Instituto Nacional de Cardiología, Ignacio Chávez, Juan Badiano # 1 Col. Sección XVI, México D.F. 14080, México. ngarciar@salud.gob.mx
Abstract:
In the present work, we show that after induction of mitochondrial damage by oxidative stress, in the presence of calcium, matrix DNA content decreased to 42+/-6%. Mitochondrial damage was analyzed by measuring aconitase activity, a marker enzyme of mitochondrial oxidative stress. The genes were identified by amplifying them through the polymerase chain reaction (PCR), using specific primers for each mitochondrial gene (MTCO1, MTCO2, MTCO3, MTND3, MTND5, MTATP6, MTATP8, and MTCYB). The results show that after oxidative stress, the amount of MTCO1, MTND3, and MTCYB genes in the mitochondria approximately decreased by 46, 22, and 54%, respectively. This effect was inhibited in the presence of cyclosporin A. These genes were found outside the mitochondria after permeability transition was induced. Mitochondrial integrity was evaluated by observing the activity of adenylate kinase and malate dehydrogenase.
Insights
Oxidative stress causes mitochondrial DNA loss and gene release. Cyclosporin A prevents this mitochondrial damage, preserving DNA within the organelle.
Area of Science:
- Mitochondrial biology
- Oxidative stress research
- Molecular genetics
Background:
- Mitochondria are crucial for cellular energy production.
- Oxidative stress can lead to mitochondrial dysfunction and damage.
- Mitochondrial DNA (mtDNA) integrity is vital for cellular health.
Purpose of the Study:
- To investigate the impact of oxidative stress on mitochondrial DNA content.
- To identify specific mitochondrial genes affected by oxidative stress.
- To explore the role of calcium and cyclosporin A in mitochondrial damage.
Main Methods:
- Induction of mitochondrial damage via oxidative stress and calcium.
- Measurement of mitochondrial DNA content.
- Analysis of aconitase activity as a marker of oxidative stress.
- Polymerase chain reaction (PCR) amplification of specific mitochondrial genes (MTCO1, MTND3, MTCYB).
- Evaluation of mitochondrial integrity using adenylate kinase and malate dehydrogenase activity assays.
Main Results:
- Mitochondrial DNA content decreased by 42% after oxidative stress induction.
- Specific mitochondrial genes (MTCO1, MTND3, MTCYB) showed significant reduction (46%, 22%, 54% respectively).
- Cyclosporin A inhibited the loss of these genes and their translocation outside mitochondria.
- Mitochondrial permeability transition was linked to gene release.
Conclusions:
- Oxidative stress, particularly in the presence of calcium, leads to significant mitochondrial DNA loss and gene release.
- Cyclosporin A protects mitochondrial integrity by preventing gene translocation.
- These findings highlight a mechanism of mitochondrial dysfunction under oxidative stress.
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