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Contrast-Matching Detergent in Small-Angle Neutron Scattering Experiments for Membrane Protein Structural Analysis and Ab Initio Modeling
Published on: October 21, 2018
Detergent-resistant membrane subfractions containing proteins of plasma membrane, mitochondrial, and internal
1Department of Physiology and Pharmacology, The University of Toledo College of Medicine, 3000 Arlington Avenue, Toledo, OH 43614-2598, USA. ronald.mellgren@utoledo.edu
Abstract:
HEK293 cell detergent-resistant membranes (DRMs) isolated by the standard homogenization protocol employing a Teflon pestle homogenizer yielded a prominent opaque band at approximately 16% sucrose upon density gradient ultracentrifugation. In contrast, cell disruption using a ground glass tissue homogenizer generated three distinct DRM populations migrating at approximately 10%, 14%, and 20% sucrose, named DRM subfractions A, B, and C, respectively. Separation of the DRM subfractions by mechanical disruption suggested that they are physically associated within the cellular environment, but can be dissociated by shear forces generated during vigorous homogenization. All three DRM subfractions possessed cholesterol and ganglioside GM1, but differed in protein composition. Subfraction A was enriched in flotillin-1 and contained little caveolin-1. In contrast, subfractions B and C were enriched in caveolin-1. Subfraction C contained several mitochondrial membrane proteins, including mitofilin and porins. Only subfraction B appeared to contain significant amounts of plasma membrane-associated proteins, as revealed by cell surface labeling studies. A similar distribution of DRM subfractions, as assessed by separation of flotillin-1 and caveolin-1 immunoreactivities, was observed in CHO cells, in 3T3-L1 adipocytes, and in HEK293 cells lysed in detergent-free carbonate. Teflon pestle homogenization of HEK293 cells in the presence of the actin-disrupting agent latrunculin B generated DRM subfractions A-C. The microtubule-disrupting agent vinblastine did not facilitate DRM subfraction separation, and DRMs prepared from fibroblasts of vimentin-null mice were present as a single major band on sucrose gradients, unless pre-treated with latrunculin B. These results suggest that the DRM subfractions are interconnected by the actin cytoskeleton, and not by microtubes or vimentin intermediate filaments. The subfractions described may prove useful in studying discrete protein populations associated with detergent-resistant membranes, and their potential interactions in cell signaling.
Insights
Mechanical cell disruption reveals distinct detergent-resistant membrane (DRM) subfractions. These DRMs are physically linked by the actin cytoskeleton, offering new insights into cell signaling.
Area of Science:
- Cell Biology
- Biochemistry
- Molecular Biology
Background:
- Detergent-resistant membranes (DRMs) are essential lipid raft domains involved in cellular signaling.
- Standard homogenization methods often yield a single DRM population, masking potential heterogeneity.
Purpose of the Study:
- To investigate the existence and characteristics of distinct DRM subfractions.
- To determine the cellular components responsible for the association of these DRM subfractions.
Main Methods:
- HEK293 cells were homogenized using different methods (Teflon pestle vs. ground glass) followed by sucrose density gradient ultracentrifugation.
- DRM subfractions were analyzed for cholesterol, ganglioside GM1, and protein composition.
- Cell surface labeling and immunofluorescence were used to identify protein localization.
- The role of cytoskeletal elements (actin, microtubules, vimentin) was assessed using specific inhibitors and knockout cells.
Main Results:
- Ground glass homogenization yielded three distinct DRM subfractions (A, B, C) with varying protein compositions, unlike Teflon pestle homogenization.
- All subfractions contained cholesterol and ganglioside GM1, but differed in flotillin-1 and caveolin-1 enrichment.
- Subfraction C contained mitochondrial proteins, while subfraction B was enriched in plasma membrane proteins.
- DRM subfraction separation was dependent on the actin cytoskeleton, as disruption with latrunculin B generated all three subfractions, while microtubule or vimentin disruption did not.
Conclusions:
- DRM subfractions represent physically associated but dissociable membrane domains.
- The actin cytoskeleton plays a crucial role in maintaining the structural integrity and association of these DRM subfractions.
- These distinct DRM subfractions may serve as platforms for specific cellular signaling events.
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