Related Experiment Video
Updated: Jul 11, 2026

Synthesis of Wavelength-shifting DNA Hybridization Probes by Using Photostable Cyanine Dyes
Published on: July 6, 2016
Near IR-emitting DNA-probes exploiting stepwise energy transfer processes
Andras Bodi1, K Eszter Borbas, James I Bruce
1Molecular Dynamics Group, Paul Scherrer Institut, Villigen, 5232, Switzerland.
Researchers developed new near-infrared emitting lanthanide complexes for luminescent DNA sensing. These complexes utilize an energy transfer cascade and show selective switching by double-stranded DNA for near-infrared detection.
Area of Science:
- Coordination Chemistry
- Supramolecular Chemistry
- Photophysics
Background:
- Lanthanide complexes are crucial for luminescence applications, but efficient near-infrared (NIR) emission remains a challenge.
- Energy transfer cascades offer a pathway to sensitize lanthanide emission across the UV-visible-NIR spectrum.
- Developing selective sensors for biomolecules like DNA is vital for diagnostics and research.
Purpose of the Study:
- To synthesize and characterize novel cyclen-based lanthanide complexes for NIR emission.
- To investigate the energy transfer dynamics within a coumarin-rhodamine-lanthanide cascade.
- To establish a luminescent DNA-sensing platform operating in the NIR region.
Main Methods:
- Synthesis of cyclen-based lanthanide complexes.
- Characterization using spectroscopic techniques (UV-Vis absorption, emission spectroscopy).
- Computational analysis using Density Functional Theory (DFT) for regioselectivity.
- Evaluation of DNA-sensing capabilities through luminescence modulation.
Main Results:
- Successful synthesis of two new cyclen-based NIR-emitting lanthanide complexes.
- Demonstration of an efficient energy transfer cascade from coumarin to rhodamine to lanthanide.
- Observation of large Stokes shifts due to the cascade mechanism.
- Selective switching off of one energy transfer pathway by double-stranded DNA.
- Successful luminescent DNA sensing in the NIR region.
Conclusions:
- The developed cyclen-based lanthanide complexes exhibit efficient NIR emission via an energy transfer cascade.
- The system allows for selective luminescent DNA sensing in the NIR region by exploiting DNA-induced modulation of energy transfer.
- DFT calculations provide insights into the regioselective functionalization of the cyclen scaffold.
More Related Videos
07:10Split Hybridization Probe Utilizing a DNA Fluorescent Light-up Aptamer as a Signal Reporter for Sequence-Specific Nucleic Acid Analysis
Published on: July 8, 2025
09:58An Optimized Protocol for Electrophoretic Mobility Shift Assay Using Infrared Fluorescent Dye-labeled Oligonucleotides
Published on: November 29, 2016
Related Concept Videos
Labeling DNA Probes
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
Southern Blot
Denatured DNA fragments must be transferred onto a carrier membrane from the gel to make it accessible to a probe - a small ssDNA fragment complementary to the target DNA...