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Updated: Jul 11, 2026

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
Histone deacetylase inhibitors in cancer therapy: latest developments, trends and medicinal chemistry perspective
Konstantin V Balakin1, Yan A Ivanenkov, Alex S Kiselyov
1ChemDiv, Inc. 6605 Nancy Ridge Dr. San Diego, CA 92121, USA. kb@chemdiv.com
Abstract:
Regulation of gene expression is mediated by several mechanisms such as DNA methylation, ATP-dependent chromatin remodeling, and post-translational modifications of histones. The latter mechanism includes dynamic acetylation and deacetylation of epsilon-amino groups of lysine residues present in the tail of the core histones. Enzymes responsible for the reversible acetylation/deacetylation processes are histone acetyltransferases (HATs) and histone deacetylases (HDACs), respectively. There are three mammalian HDAC families, namely HDACs I, II and III based on their sequence homology. Inhibitors of HDACs induce hyperacetylation of histones that modulate chromatin structure and gene expression resulting in growth arrest, cell differentiation, and apoptosis of tumor cells. In addition, HDAC inhibitors enhance efficacy of anticancer agents that target DNA. Several formidable challenges associated with their development include non-specific toxicity and poor PK properties, including cell permeability. In this review, we comment on the current progress in design, discovery, in vitro/ex vivo activity and clinical potential of the synthetic modulators of HDACs.
Insights
Histone deacetylase (HDAC) inhibitors show promise in cancer therapy by modulating gene expression and enhancing chemotherapy. Current research focuses on overcoming challenges like toxicity and poor pharmacokinetic properties for synthetic HDAC modulators.
Area of Science:
- Biochemistry
- Molecular Biology
- Epigenetics
Background:
- Gene expression regulation involves DNA methylation, chromatin remodeling, and histone post-translational modifications.
- Histone acetylation/deacetylation by histone acetyltransferases (HATs) and histone deacetylases (HDACs) dynamically alters chromatin structure.
- Mammalian HDACs are classified into three families (I, II, III) based on sequence homology.
Purpose of the Study:
- To review the design, discovery, and development of synthetic modulators of histone deacetylases (HDACs).
- To discuss the in vitro/ex vivo activity and clinical potential of these novel HDAC inhibitors.
- To highlight challenges in HDAC inhibitor development, including toxicity and pharmacokinetic properties.
Main Methods:
- Review of current literature on synthetic HDAC modulators.
- Analysis of in vitro and ex vivo data regarding HDAC inhibitor activity.
- Evaluation of clinical trial data and preclinical studies for HDAC-targeted therapies.
Main Results:
- HDAC inhibitors induce histone hyperacetylation, impacting chromatin structure and gene expression.
- These inhibitors promote tumor cell growth arrest, differentiation, and apoptosis.
- HDAC inhibitors can potentiate the efficacy of DNA-targeting anticancer agents.
Conclusions:
- Synthetic HDAC modulators offer therapeutic potential in oncology.
- Overcoming non-specific toxicity and improving pharmacokinetic profiles are critical for clinical success.
- Further research into novel HDAC inhibitor design and application is warranted.
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