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Updated: Jul 11, 2026

Analysis of SEC-SAXS data via EFA deconvolution and Scatter
Published on: January 28, 2021
Conformational analysis of the leukocyte-specific EF-hand protein p65/L-plastin by X-ray scattering in solution
Hiroto Shinomiya1, Masaji Shinjo, Liu Fengzhi
1Department of Immunology and Host Defenses, Graduate School of Medicine of Ehime University, Ehime, Japan. hiroto@m.ehime-u.ac.jp
Abstract:
p65/L-Plastin is a leukocyte-specific EF-hand protein which plays a vital role in organizing the actin cytoskeleton. Since its overall structural information has been largely unknown, we employed the X-ray scattering technique to elucidate the structure. Kratky plots of p65/L-plastin showed one peak, indicating that the protein takes compact globular conformations. The radii of gyration (Rg) of the monomer p65/L-plastin estimated from Guinier plots were 27.5 +/- 0.5 A and 28.6 A in the absence and presence of Ca(2+), respectively. The distance distribution function P(r) gave single peaks at 31.5-32.3 A and 33 A in the absence and presence of Ca(2+), respectively. These indicate that p65/L-plastin becomes somewhat larger in the presence of Ca(2+). The molecular shape of p65/L-plastin reconstructed from X-ray scattering data using the DAMMIN program has provided the first view of the overall structure of full-length plastin/fimbrin family proteins: a compact horseshoe-like shape with a small projection, which also exhibits Ca(2+) -induced conformational changes.

