Related Experiment Video
Updated: Jul 11, 2026

An In Vitro Single-Molecule Imaging Assay for the Analysis of Cap-Dependent Translation Kinetics
Published on: September 15, 2020
In vitro and tissue culture methods for analysis of translation initiation on the endoplasmic reticulum
Samuel B Stephens1, Christopher V Nicchitta
1Department of Cell Biology, Duke University Medical Center, Durham, North Carolina, USA.
Abstract:
For mRNAs encoding secretory and integral membrane proteins, translation initiation is thought to begin a process of mRNA localization where mRNA/ribosome/nascent chain complexes (RNCs) are trafficked from the cytosol compartment to the endoplasmic reticulum (ER). At the ER membrane, RNCs bind to a protein-conducting channel via the large ribosomal subunit and protein translocation ensues through coupling of the ribosomal nascent protein exit site with the protein-conducting channel. At the termination of translation, ribosomal subunits are thought to dissociate from the ER to return to a common cytoplasmic pool and participate in additional cycles of initiation, translation, targeting, termination, and ER membrane release. Experimental evidence has demonstrated that ER-membrane ribosomes are capable of de novo initiation, that mRNA partitioning to the ER membrane does not, per se, require translation of an encoded signal sequence, and that ribosomal subunit dissociation from the ER membrane is not obligatorily coupled to protein synthesis termination. These findings suggest that the cycle of protein synthesis-initiation, elongation, and termination-can occur on the two-dimensional plane of the ER membrane and challenge current views on the subcellular restriction of translation initiation to the cytosol, the role of the ribosome cycle in partitioning mRNA between the cytosol and ER, and the in vivo basis for termination-induced ribosomal subunit dissociation. In the following chapter, we provide detailed experimental methods to study protein synthesis initiation on the ER membrane.
Insights
Translation initiation for secretory proteins occurs at the endoplasmic reticulum (ER) membrane, challenging the view that it is restricted to the cytosol. Ribosomes can initiate and complete protein synthesis on the ER membrane.
Area of Science:
- Molecular Biology
- Cell Biology
- Protein Synthesis
Background:
- Translation initiation for secretory and membrane proteins is believed to involve mRNA localization to the endoplasmic reticulum (ER).
- Ribonucleoprotein complexes (RNCs) traffic from the cytosol to the ER membrane, where they bind to protein-conducting channels for translocation.
- Ribosomal subunits are thought to dissociate from the ER upon translation termination to re-enter the cytoplasmic pool.
Purpose of the Study:
- To investigate the location and mechanisms of translation initiation for secretory and membrane proteins.
- To challenge the established model of translation initiation being solely restricted to the cytosol.
- To explore the role of the ribosome cycle in mRNA partitioning and protein synthesis at the ER membrane.
Main Methods:
- Experimental methods were employed to study protein synthesis initiation directly on the ER membrane.
- Analysis of mRNA partitioning to the ER membrane independent of signal sequence translation.
- Investigation of ribosomal subunit dissociation from the ER membrane in relation to protein synthesis termination.
Main Results:
- Experimental evidence shows that ribosomes on the ER membrane are capable of de novo translation initiation.
- mRNA partitioning to the ER membrane does not inherently require the translation of a signal sequence.
- Ribosomal subunit dissociation from the ER membrane is not obligatorily coupled to the termination of protein synthesis.
Conclusions:
- The complete cycle of protein synthesis, including initiation, elongation, and termination, can occur on the ER membrane.
- These findings challenge the traditional view of translation initiation being exclusively cytosolic.
- The study re-evaluates the ribosome cycle's role in mRNA localization and ribosomal subunit dynamics at the ER membrane.
Related Concept Videos
Initiation of Translation
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
Initiation of Translation
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
Improving Translational Accuracy
Leaky Scanning
Translation in Prokaryotes
Ribosome Profiling
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...

