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Updated: Jul 10, 2026

Navigating the Mass Spectrometry-Based Proteomic Data Using Free Computational Tools
Published on: August 19, 2025
[Proteomic analysis on portal vein tumor thrombus-associated proteins for hepatocellular carcinoma]
Wei-Xing Guo1, Xiao-Bo Man, Hai-Xin Yuan
1Eastern Hepatobiliary Surgery Hospital, The Second Military Medical University, Shanghai 200438, China.
Objective:
A comparative proteomic approach was used to analyze proteins relevant to portal vein tumor thrombus forming.
Methods:
proteins extracted from five pairs of matched primary tumor/tumor thrombus samples in the same patient were separated by two-dimensional gel electrophoresis (2-DE). Selected proteins exhibiting statistically significant alternations were identified by mass spectrometry. Western blotting was further performed to examine the expression of the candidate proteins.
Result:
There were 20 significant proteins were identified in total, Among the 20 spots, 12 proteins were up-regulated proteins in primary tumor tissue, including Galectin-1, HMGBI, peroxiredoxin 1, Cyclophilin B, PCNA. whereas 8 were up-regulated proteins in tumor thrombus samples, including Annexin V, Triosephosphate Isomerase. Western blotting Confirmed the difference of Annexin V on protein level.
Conclusion:
There are many proteins associated with the formation of PVTT in HCC. The overexpression of Annexin V may serve as a biomarker for early detection and therapeutic targets to HCC with PVTT.
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