Related Experiment Video
Updated: Jul 10, 2026

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
Published on: August 15, 2019
Evaluating the automatic mapping of human gene and protein mentions to unique identifiers
Alexander A Morgan1, Benjamin Wellner, Jeffrey B Colombe
1MITRE Corporation, 202 Burlington Road Bedford, MA 01730, USA. alexmo@stanford.edu
Abstract:
We have developed a challenge task for the second BioCreAtIvE (Critical Assessment of Information Extraction in Biology) that requires participating systems to provide lists of the EntrezGene (formerly LocusLink) identifiers for all human genes and proteins mentioned in a MEDLINE abstract. We are distributing 281 annotated abstracts and another 5,000 noisily annotated abstracts along with a gene name lexicon to participants. We have performed a series of baseline experiments to better characterize this dataset and form a foundation for participant exploration.
Related Concept Videos
Genome Annotation and Assembly
Protein Networks
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
Covalently Linked Protein Regulators
These groups modify specific amino acids in a protein.
Protein-protein Interfaces
Tagging and Fusion Proteins
Gene Families
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...

