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Published on: May 30, 2017
Three pathogenicity islands of Vibrio cholerae can excise from the chromosome and form circular intermediates
Ronan A Murphy1, E Fidelma Boyd
1Department of Biological Sciences, University of Delaware, Newark, DE 19716, USA.
Abstract:
Vibrio pathogenicity island-2 (VPI-2) is a 57-kb region integrated at a transfer RNA (tRNA)-serine locus that encompasses VC1758 to VC1809 on the V. cholerae N16961 genome and is present in pandemic isolates. VPI-2 encodes a P4-like integrase, a restriction modification system, a Mu phage-like region, and a sialic acid metabolism region, as well as neuraminidase (VC1784), which is a glycosylhydrolase known to release sialic acid from sialoglycoconjugates to unmask GM1 gangliosides, the receptor for cholera toxin. We examined the tRNA-serine locus among the sequenced V. cholerae genomes and identified five variant VPI-2 regions, four of which retained the sialometabolism region. Three variant VPI-2 regions contained a type three secretion system. By using an inverse nested PCR approach, we found that the VPI-2 region can form an extrachromosomal circular intermediate (CI) molecule after precise excision from its tRNA-serine attachment site. We constructed a knockout mutant of VC1758 (int) with V. cholerae strain N16961 and found that no excision PCR product was produced, indicating that a functional cognate, VPI-2 integrase, is required for excision. The Vibrio seventh pandemic island-I (VSP-I) and VSP-II regions are present in V. cholerae O1 El Tor and O139 serogroup isolates. Novel regions are present at the VSP-I insertion site in strain MZO-3 and at the VSP-II insertion site in strain 623-39. VSP-II is a 27-kb region that integrates at a tRNA-methionine locus, is flanked by direct repeats, and encodes a P4-like integrase. We show that VSP-II can excise and form a CI and that the cognate VSP-II integrase is required for excision. Interestingly, VSP-I is not inserted at a tRNA locus and does encode a XerDC-like recombinase, but similar to VPI-2 and VSP-II, VSP-I does excise from the genome to form a CI. These results show that all three pathogenicity islands can excise from the chromosome, which is likely a first step in their horizontal transfer.
Insights
Vibrio pathogenicity islands (VPI-2, VSP-I, VSP-II) can excise from the V. cholerae chromosome. This excision, requiring specific integrases, is a key step for horizontal gene transfer and potential pandemic spread.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Vibrio pathogenicity island-2 (VPI-2) is a 57-kb genomic region found in pandemic Vibrio cholerae isolates.
- VPI-2 is integrated at a transfer RNA (tRNA)-serine locus and encodes genes for sialic acid metabolism, including neuraminidase, which unmasks the cholera toxin receptor.
- Other Vibrio seventh pandemic islands (VSP-I and VSP-II) are also present in pandemic strains and integrate at tRNA loci.
Purpose of the Study:
- To investigate the excision mechanism of VPI-2, VSP-I, and VSP-II from the Vibrio cholerae genome.
- To determine the role of specific integrases in the excision process.
- To understand the potential for horizontal gene transfer of these pathogenicity islands.
Main Methods:
- Analysis of sequenced V. cholerae genomes to identify variants of VPI-2, VSP-I, and VSP-II.
- Inverse nested PCR to detect extrachromosomal circular intermediate (CI) molecules.
- Construction of knockout mutants for integrase genes (e.g., VC1758 for VPI-2) to assess their necessity for excision.
Main Results:
- VPI-2, VSP-I, and VSP-II were all shown to excise from the V. cholerae chromosome, forming circular intermediate molecules.
- Excision of VPI-2 and VSP-II requires their respective cognate P4-like integrases.
- VSP-I, although not integrated at a tRNA locus and encoding a XerDC-like recombinase, also undergoes excision.
Conclusions:
- All three major Vibrio pathogenicity islands (VPI-2, VSP-I, VSP-II) possess the capability to excise from the host chromosome.
- Integrase-mediated excision is a crucial step preceding the horizontal transfer of these pathogenicity islands.
- Understanding these excision mechanisms provides insights into the evolution and spread of Vibrio cholerae.
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