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Updated: Jul 10, 2026

A Bioinformatics Pipeline to Accurately and Efficiently Analyze the MicroRNA Transcriptomes in Plants
Published on: January 21, 2020
Update of ASRP: the Arabidopsis Small RNA Project database
Tyler W H Backman1, Christopher M Sullivan, Jason S Cumbie
1Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology and Molecular and Cellular Biology Program, Oregon State University, Corvallis, OR 97331, USA.
Abstract:
Development of the Arabidopsis Small RNA Project (ASRP) Database, which provides information and tools for the analysis of microRNA, endogenous siRNA and other small RNA-related features, has been driven by the introduction of high-throughput sequencing technology. To accommodate the demands of increased data, numerous improvements and updates have been made to ASRP, including new ways to access data, more efficient algorithms for handling data, and increased integration with community-wide resources. New search and visualization tools have also been developed to improve access to small RNA classes and their targets. ASRP is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu/db/.

