Related Experiment Video
Updated: Jul 10, 2026

Atomic Force Microscopy Combined with Infrared Spectroscopy as a Tool to Probe Single Bacterium Chemistry
Published on: September 15, 2020
Spatially resolved force spectroscopy of bacterial surfaces using force-volume imaging
Fabien Gaboriaud1, Bhargava S Parcha, Michelle L Gee
1Laboratory of Physical Chemistry and Microbiology for the Environment, Nancy-University, CNRS, Villers-lès-Nancy, France. gaboriaud@lcpme.cnrs-nancy.fr
Atomic force microscopy (AFM) force-volume mode accurately images bacterial cell surfaces, unlike contact mode which causes deformation. This improved imaging allows for precise measurement of microbial cell mechanical properties.
Area of Science:
- Microbial cell surface analysis
- Atomic Force Microscopy (AFM) applications
- Biophysical characterization
Background:
- Atomic force microscopy (AFM) is crucial for measuring forces at microbial cell surfaces.
- Contact-mode AFM imaging is typically used to locate measurement points but can distort cell topography.
- Bacterial cell deformability and curvature complicate accurate imaging with contact-mode AFM.
Purpose of the Study:
- To compare AFM force-volume mode imaging with contact-mode imaging for bacterial cells.
- To demonstrate the artifact introduced by contact-mode imaging due to cell deformation.
- To highlight the advantages of force-volume mode for accurate topographic reconstruction and mechanical property extraction.
Main Methods:
- Imaging the bacterial cell Shewanella putrefaciens using AFM in both contact mode and force-volume mode.
- Analyzing the topographic data obtained from both imaging modes to identify discrepancies.
- Acquiring force-indentation data using force-volume mode for mechanical property analysis.
Main Results:
- Contact-mode imaging deforms bacterial cells, inaccurately locating the apical surface and periphery.
- Force-volume mode imaging reconstructs topography from individual force profiles, avoiding deformation artifacts.
- Force-volume measurements provide load-indentation data for extracting mechanical properties like Young's modulus and turgor pressure.
Conclusions:
- Force-volume mode AFM is superior to contact mode for accurate imaging of bacterial cell surfaces.
- The avoidance of deformation artifacts in force-volume mode enables reliable topographic mapping.
- Force-volume mode AFM facilitates comprehensive mechanical characterization of microbial cells.
Related Concept Videos
Two-Dimensional Microscopy in Microbiology
Three-Dimensional Microscopy in Microbiology
Atomic Force Microscopy
The AFM Probe
The probe is regarded as the heart of any AFM setup and comprises the...

