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Updated: Jul 10, 2026

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Functional characterization of a novel missense CLCN5 mutation causing alterations in proximal tubular endocytic
Atsuhito Tanuma1, Hiroyoshi Sato, Tetsuro Takeda
1Division of Clinical Nephrology and Rheumatology, Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.
Background/Aims:
Mutations of the endosomal chloride/proton exchanger gene, CLCN5, cause Dent's disease, an X-linked recessive proximal tubular disorder. The renal endocytic system was found to be affected in clcn5 knockout mice. However, the impaired endocytic machinery of Dent's disease patients has not been thoroughly investigated.
Methods:
The CLCN5 gene was sequenced in a Japanese patient with Dent's disease and his family. The loss-of-function phenotype of the missense CLCN5 mutation was investigated by gene expression in Xenopus oocytes and CHO cells. Immunohistochemical analysis was performed on kidney biopsy specimens for endocytic machinery proteins, megalin, cubilin, and disabled-2 (Dab2) in proximal tubules.
Results:
Genomic analysis revealed a novel G-to-A transition at the first nucleotide of the 333rd codon of CLCN5, causing a substitution of glycine with arginine. Inefficient expression of the mutant gene in Xenopus oocytes resulted in abolished chloride currents. Impaired N-glycosylation of the mutant protein was evident in the DNA-transfected CHO cells. Proximal tubular expression of megalin, cubilin, and Dab2 was markedly reduced and irregular staining in some portions was observed in the patient compared with controls.
Conclusions:
A novel G333R CLCN5 mutation caused defective expression of megalin, cubilin, and Dab2 in a patient with Dent's disease.
Insights
A novel CLCN5 mutation (G333R) causes Dent's disease by impairing endocytic machinery, specifically reducing megalin, cubilin, and Dab2 expression in kidney tubules.
Area of Science:
- Nephrology
- Molecular Genetics
- Cell Biology
Background:
- Dent's disease is an X-linked recessive proximal tubular disorder caused by mutations in the CLCN5 gene.
- The renal endocytic system is affected in CLCN5 knockout mice, but patient-specific defects remain unclear.
Observation:
- A novel missense mutation (G333R) in the CLCN5 gene was identified in a Japanese Dent's disease patient.
- The G333R mutation led to abolished chloride currents and impaired N-glycosylation of the CLCN5 protein.
- Kidney biopsy revealed significantly reduced and irregular expression of endocytic proteins megalin, cubilin, and Dab2 in proximal tubules.
Findings:
- The identified G333R CLCN5 mutation results in a loss-of-function phenotype.
- Defective CLCN5 expression directly impacts the expression of key endocytic machinery proteins, megalin, cubilin, and Dab2.
Implications:
- This study elucidates the molecular mechanism underlying Dent's disease pathogenesis at the cellular level.
- Understanding these defects provides insights into renal endocytic dysfunction and potential therapeutic targets.
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