Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Dendroscope: An interactive viewer for large phylogenetic trees.

Daniel H Huson1, Daniel C Richter, Christian Rausch

  • 1Center for Bioinformatics Tübingen (ZBIT), Eberhard-Karls-Universität Tübingen, Sand 14, 72076 Tübingen, Germany. huson@informatik.uni-tuebingen.de

BMC Bioinformatics
|November 24, 2007
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Mars' induced magnetosphere can form under radial interplanetary magnetic field.

Innovation (Cambridge (Mass.))·2026
Same author

Association between depressive symptoms and atherosclerotic cardiovascular disease: a Swedish population-based cohort study.

BMC cardiovascular disorders·2026
Same author

Statistical Analysis and Modeling of the 3D Morphology and Texture of Lunar Regolith Simulants.

Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada·2026
Same author

Displacement-Optimized Tanglegrams for Trees and Networks.

Molecular biology and evolution·2026
Same author

Blinatumomab in Combined Immune Thrombocytopenia and Antiphospholipid Syndrome.

The New England journal of medicine·2026
Same author

MMonitor for real-time monitoring of microbial communities using long reads.

Cell reports methods·2025
Same journal

OpenIMC: an open-source platform for analyzing single-cell and spatial proteomics by imaging mass cytometry.

BMC bioinformatics·2026
Same journal

NAP: an open source pipeline for cross-domain microbiome profiling using Nanopore sequencing-derived amplicon data.

BMC bioinformatics·2026
Same journal

SurvGME: an R package for survival analysis with graphical and measurement error models.

BMC bioinformatics·2026
Same journal

SimMapNet: a Bayesian framework for gene regulatory network inference using gene ontology similarities as external hint.

BMC bioinformatics·2026
Same journal

Dual channel drug-drug interactions extraction based on cross attention.

BMC bioinformatics·2026
Same journal

FeSseqdb: a curated sequence-level database and interpretable machine learning framework for identifying iron-sulfur proteins.

BMC bioinformatics·2026
See all related articles

Dendroscope is a new, user-friendly software for visualizing and editing large phylogenetic trees. It offers interactive navigation and editing features, optimized for hundreds of thousands of taxa across major operating systems.

Area of Science:

  • Evolutionary biology
  • Bioinformatics
  • Computational biology

Background:

  • Phylogenetic tree visualization and editing are crucial for evolutionary research, especially with large datasets from expression analysis or metagenomics.
  • Existing tools often lack standard features, struggle with large datasets (hundreds of thousands of taxa), or have installation/compatibility issues.
  • There is a need for efficient, user-friendly software for phylogenetic tree manipulation across major operating systems.

Purpose of the Study:

  • To develop an efficient and user-friendly program for interactive visualization and navigation of phylogenetic trees.
  • To address the limitations of existing software in handling large datasets and providing comprehensive features.
  • To ensure easy installation and cross-platform compatibility for evolutionary researchers.

Related Experiment Videos

Main Methods:

  • Development of a new software program named Dendroscope.
  • Implementation using Java 1.4 for cross-platform compatibility.
  • Optimization for interactive performance with large-scale phylogenetic trees.

Main Results:

  • Dendroscope enables interactive visualization and navigation of phylogenetic trees.
  • The software is optimized for handling trees with hundreds of thousands of taxa efficiently.
  • Features include standard tree visualizations, editing capabilities, graphics export, and a magnification tool for large trees.
  • Installers are available for Linux/Unix, MacOS X, and Windows XP.

Conclusions:

  • Dendroscope provides a user-friendly solution for visualizing and navigating phylogenetic trees.
  • The software effectively handles both small and very large datasets.
  • It offers a valuable tool for evolutionary research requiring robust phylogenetic tree manipulation.