Related Experiment Video
Updated: Jul 9, 2026

13:34
Gene Trapping Using Gal4 in Zebrafish
Published on: September 29, 2013
Transposons as tools for enhancer trap screens in vertebrates
1Institute of Molecular and Cell Biology, Biopolis Dr, Proteos, 138673, Singapore. vlad@imcb.a-star.edu.sg
Genome Biology
|December 6, 2007
Summary
DNA transposons, like the Tol2 transposon, are valuable for studying gene regulation in vertebrates. This research highlights their use in zebrafish enhancer trap screens, comparing this method to others for analyzing the regulatory genome.
Area of Science:
- Genomics
- Molecular Biology
- Developmental Biology
Background:
- DNA transposons are widely used for transgenesis.
- Enhancer trap screens are crucial for analyzing the regulatory genome in vertebrates.
Purpose of the Study:
- To discuss recent advancements in using DNA transposons for regulatory genome analysis.
- To focus on the application of the Tol2 transposon for enhancer trapping in zebrafish.
- To compare the Tol2-based approach with other similar methods.
Main Methods:
- Utilizing the Tol2 transposon system for enhancer trapping.
- Employing zebrafish as a model organism.
- Comparative analysis of different enhancer trapping strategies.
Main Results:
- The Tol2 transposon facilitates efficient enhancer trapping in zebrafish.
- This method provides insights into the vertebrate regulatory genome.
- Comparison with other techniques highlights the utility of Tol2.
Conclusions:
- The Tol2 transposon is a powerful tool for enhancer trapping in zebrafish.
- This approach contributes significantly to understanding vertebrate gene regulation.
- The Tol2 system offers a valuable alternative for regulatory genome analysis.
Related Concept Videos
DNA-only Transposons
DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
The donor site from where the transposon is excised is either degraded or...
Transposons
Transposons, or "jumping genes," are small mobile genetic elements (MGEs) that range from 700 to 40,000 base pairs in length. They are found in all organisms and can move within the same chromosome or transfer to different chromosomes. In some cases, transposons can also jump between different host DNA molecules, such as plasmids or viruses, contributing to genetic variability.Barbara McClintock first discovered these mobile genetic elements in the 1940s while studying maize genetics, and she...
Overview of Transposition and Recombination
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
Non-LTR Retrotransposons
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
LTR Retrotransposons
LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila.
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
Conservative Site-specific Recombination and Phase Variation
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...

