Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
Plant Breeding and Biotechnology01:59

Plant Breeding and Biotechnology

Crop cultivation has a long history in human civilization, with records showing the cultivation of cereal plants beginning at around 8000 BC. This early plant breeding was developed primarily to provide a steady supply of food.
Introduction to Plant Diversity02:22

Introduction to Plant Diversity

From Water to Land
Gene Flow02:39

Gene Flow

Gene flow is the transfer of genes among populations, resulting from either the dispersal of gametes or from the migration of individuals.
Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes02:16

Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes

The present-day mitochondrial and chloroplast genomes have retained some of the characteristics of their ancestral prokaryotes and also have acquired new attributes during their evolution within eukaryotic cells. Like prokaryotic genomes, mitochondrial and chloroplast genomes neither bind with histone-like proteins nor show complex packaging into chromosome-like structures, as observed in eukaryotes. Unlike mitotic cell divisions observed in eukaryotic cells, mitochondria and chloroplasts...
Monohybrid Crosses01:20

Monohybrid Crosses

Overview

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Reliability of stromal markers multiplex immunofluorescent staining: pathologist assessment compared to quantitative image analysis.

American journal of cancer research·2026
Same author

The Development of Tools to Investigate Potential Sources of Sample Misidentification Within a Biorepository: Case Studies.

Biopreservation and biobanking·2026
Same author

RAS signaling in lung adenocarcinoma is defined by lineage context and DUSP4 loss.

JCI insight·2026
Same author

The NeuroBioBank whole-genome catalogue of human brain donors with central nervous system disorders.

Brain : a journal of neurology·2026
Same author

A single valine to leucine switch disrupts Plasmodium falciparum AP2-G DNA binding and reveals GDV1's role in ap2-g activation.

Nature communications·2026
Same author

Mapping the secondary response to traumatic brain injury using spatial transcriptomics shows acute 4-aminopyridine treatment mitigates axonal and molecular pathology.

Acta neuropathologica communications·2026

Related Experiment Video

Updated: Jul 9, 2026

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
08:09

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Published on: June 17, 2012

PlantGDB: a resource for comparative plant genomics.

Jon Duvick1, Ann Fu, Usha Muppirala

  • 1Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA.

Nucleic Acids Research
|December 8, 2007
PubMed
Summary

PlantGDB is a genomics database for green plants, offering annotated transcript assemblies and genome browsers for over 100 species. It provides tools for sequence analysis and community gene model curation.

More Related Videos

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
09:37

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information

Published on: August 15, 2019

Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens
13:03

Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens

Published on: March 8, 2018

Related Experiment Videos

Last Updated: Jul 9, 2026

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
08:09

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Published on: June 17, 2012

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
09:37

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information

Published on: August 15, 2019

Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens
13:03

Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens

Published on: March 8, 2018

Area of Science:

  • Genomics
  • Bioinformatics
  • Plant Science

Background:

  • PlantGDB is a comprehensive genomics database for green plants (Viridiplantae).
  • It houses annotated transcript assemblies for over 100 plant species.
  • The database integrates sequence data with analysis tools and web services.

Purpose of the Study:

  • To present the PlantGDB database and its functionalities.
  • To highlight new web services for sequence analysis and data integration.
  • To provide a resource for plant genomics research and training.

Main Methods:

  • Curated and integrated sequence data for >100 plant species.
  • Developed genome browsers (xGDB) for visualization and annotation of transcript and protein alignments.
  • Integrated yrGATE for community-driven gene model curation.
  • Developed novel web services: Tracembler for contig generation from trace data and BioExtract Server for custom workflows.

Main Results:

  • PlantGDB offers annotated transcript assemblies mapped to genomic context for numerous plant species.
  • Genome browsers (xGDB) facilitate detailed evaluation of transcript and protein alignments.
  • New web services enhance data analysis capabilities, including trace file processing and custom workflow execution.
  • The Plant Genomics Research Outreach Portal (PGROP) provides access to extensive resources.

Conclusions:

  • PlantGDB serves as a valuable, integrated resource for plant genomics research.
  • The database facilitates gene model annotation and analysis through advanced tools and community curation.
  • PlantGDB supports research and training in plant genomics with its comprehensive data and web services.