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Updated: Jul 9, 2026

Quantification of Site-specific Protein Lysine Acetylation and Succinylation Stoichiometry Using Data-independent Acquisition Mass Spectrometry
Published on: April 4, 2018
Polyketide analysis using mass spectrometry, evaporative light scattering, and charged aerosol detector systems
Michael Pistorino1, Blaine A Pfeifer
1Department of Chemical and Biological Engineering, Tufts University, Medford, MA 02155, USA.
Mass spectrometry (MS) offers superior detection for polyketide analysis, but charged aerosol detection (CAD) provides a cost-effective alternative with comparable performance for low-titer production.
Area of Science:
- Analytical Chemistry
- Biotechnology
- Organic Chemistry
Background:
- Polyketide compounds, like the erythromycin precursor 6-deoxyerythronolide B, often lack natural chromophores, complicating their detection.
- Accurate quantification and identification are crucial for optimizing polyketide production schemes.
Purpose of the Study:
- To compare the analytical capabilities of mass spectrometry (MS), evaporative light scattering detection (ELSD), and charged aerosol detection (CAD) for analyzing a non-chromophoric polyketide.
- To evaluate each detector's limit of detection (LOD), dynamic range, and precision for polyketide analysis.
- To identify the most suitable detector for analyzing low-concentration, poorly characterized polyketides.
Main Methods:
- Analysis of 6-deoxyerythronolide B using MS, ELSD, and CAD.
- Evaluation of detector performance based on LOD, dynamic range, and precision.
- Comparative assessment of the three detection techniques.
Main Results:
- Mass spectrometry (MS) exhibited the lowest limit of detection (LOD) and provided molecular weight information, making it ideal for identifying unknown polyketides.
- Evaporative light scattering detection (ELSD) offered the best precision (3%) but had a higher LOD (≥1 mg/L).
- Charged aerosol detection (CAD) demonstrated a low LOD (0.012 mg/L) and a dynamic range comparable to MS, presenting a cost-effective option.
Conclusions:
- Mass spectrometry is the preferred method for analyzing complex, low-concentration polyketides requiring molecular weight data.
- Charged aerosol detection (CAD) serves as a viable and economical alternative to MS for polyketide analysis, especially in production settings with low titers.
- Both CAD and ELSD provide better precision and accuracy than MS for certain polyketide analysis scenarios.
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