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Published on: July 3, 2020
Normophosphatemic familial tumoral calcinosis is caused by deleterious mutations in SAMD9, encoding a TNF-alpha
Ilana Chefetz1, Danny Ben Amitai, Sarah Browning
1Laboratory of Molecular Dermatology and Department of Dermatology, Rambam Health Care Campus, Haifa, Israel.
Abstract:
Normophosphatemic familial tumoral calcinosis (NFTC) is an autosomal recessive disorder characterized by calcium deposition in skin and mucosae and associated with unremitting pain and life-threatening skin infections. A homozygous missense mutation (p.K1495E), resulting in SAMD9 protein degradation, was recently shown to cause NFTC in five families of Jewish-Yemenite origin. In this study, we evaluated another Jewish-Yemenite NFTC kindred. All patients were compound heterozygous for two mutations in SAMD9: K1495E and a previously unreported nonsense mutation, R344X, predicted to result in a markedly truncated molecule. Screening of unaffected population-matched controls revealed heterozygosity for K1495E and R344X only in individuals of Jewish-Yemenite ancestry, but not in more than 700 control samples of other origins, including 93 non-Jewish Yemenite. These data may be suggestive of positive selection, considering the rarity of NFTC and the small size of the Jewish-Yemenite population; alternatively, they may reflect genetic drift or the effect of a population-specific modifier trait. Calcifications in NFTC generally develop over areas subjected to repeated trauma and are associated with marked inflammatory manifestations, indicating that SAMD9 may play a role in the inflammatory response to tissue injury. We therefore assessed the effect of cellular stress and tumor necrosis factor-alpha (TNF-alpha), a potent pro-inflammatory cytokine, on SAMD9 gene expression. Whereas exogenous hydrogen peroxide and heat shock did not affect SAMD9 transcription, osmotic shock was found to markedly upregulate SAMD9 expression. In addition, incubation of endothelial cells with TNF-alpha caused a dose-related, p38-dependant increase in SAMD9 expression. These data link NFTC and SAMD9 to the TNF-alpha signaling pathway, suggesting a role for this system in the regulation of extra-osseous calcification.
Insights
Normophosphatemic familial tumoral calcinosis (NFTC) is a genetic disorder causing painful calcium deposits. New mutations in the SAMD9 gene were identified, linking NFTC to inflammation and the TNF-alpha pathway.
Area of Science:
- Genetics
- Molecular Biology
- Immunology
Background:
- Normophosphatemic familial tumoral calcinosis (NFTC) is an autosomal recessive disorder causing painful calcium deposits in skin and mucosae.
- A homozygous missense mutation (p.K1495E) in the SAMD9 gene was previously linked to NFTC in Jewish-Yemenite families.
- NFTC calcifications are associated with inflammation, suggesting a role for SAMD9 in tissue injury response.
Purpose of the Study:
- To investigate the genetic basis of NFTC in an additional Jewish-Yemenite kindred.
- To explore the relationship between SAMD9 gene expression, cellular stress, and inflammatory pathways.
Main Methods:
- Genetic analysis of NFTC patients and controls.
- Assessment of SAMD9 gene expression under cellular stress (osmotic shock, heat shock, hydrogen peroxide).
- Evaluation of SAMD9 expression in response to tumor necrosis factor-alpha (TNF-alpha) and p38 signaling inhibition.
Main Results:
- Identified compound heterozygous mutations (K1495E and R344X) in SAMD9 in the affected kindred.
- Found mutations K1495E and R344X exclusively in individuals of Jewish-Yemenite ancestry.
- Demonstrated that osmotic shock upregulates SAMD9 expression, and TNF-alpha induces a p38-dependent increase in SAMD9 expression.
Conclusions:
- NFTC pathogenesis involves novel SAMD9 mutations and may be influenced by population-specific factors in the Jewish-Yemenite population.
- SAMD9 is linked to the TNF-alpha signaling pathway, suggesting its involvement in regulating extra-osseous calcification.
- SAMD9 plays a role in the inflammatory response to tissue injury, potentially mediating calcification in NFTC.
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