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Updated: Jul 8, 2026

Evaluation of Substrate Ubiquitylation by E3 Ubiquitin-ligase in Mammalian Cell Lysates
Published on: May 10, 2022
Alternative UPS drug targets upstream the 26S proteasome
Roland Hjerpe1, Manuel S Rodríguez
1Ubiquitin-Like Molecules and Cancer Laboratory, Proteomics Unit, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, Building 801A, 48160 Derio, Spain.
Abstract:
The successful use of proteasome inhibitors in anti-cancer therapy encouraged the development of new drugs targeting the activity of the ubiquitin-proteasome system (UPS) at various levels. The UPS comprises a complex set of protein adaptors whose coordinated function modulates the interaction of ubiquitin-modified proteins with protein effectors. In addition, UPS crosstalk with other post-translational modifications, complicates a sophisticated set of conjugation and de-conjugation pathways, providing a large variety of potential targets for the development of specific inhibitors. Traditionally associated with the proteasome, ubiquitin-conjugation does not always result in protein degradation. The major signal that targets proteins for degradation is the formation of ubiquitin-chains on lysine 48 (K48). Other ubiquitin features such as K63 chains or mono-ubiquitylation appear to regulate the transient formation of functional macromolecular complexes or relocate modified proteins inside the cell. The emerging idea that UPS-mediated degradation participates not only in the initiation but also in the termination step of certain functions, highlights new potential drug targets upstream the 26S proteasome. This review underlines some of these, in particular, possibilities for intervention before the recognition of substrates by the ubiquitin-conjugating enzymes and after the conjugation of target proteins with ubiquitin. To illustrate possible therapeutic targets at the level of transcription, subcellular distribution and signal transduction pathways, NF-kappaB and p53 have been used as main examples in this review.
Insights
New anti-cancer drugs target the ubiquitin-proteasome system (UPS). This review explores novel therapeutic targets within the UPS, focusing on interventions before and after protein ubiquitination for cancer treatment.
Area of Science:
- Biochemistry
- Molecular Biology
- Pharmacology
Background:
- The ubiquitin-proteasome system (UPS) is crucial for protein regulation and a target for anti-cancer therapies.
- UPS activity involves complex conjugation and de-conjugation pathways, offering diverse targets for drug development.
- Ubiquitin-conjugation, particularly K48-linked chains, signals protein degradation, while other forms regulate protein function and localization.
Purpose of the Study:
- To review potential therapeutic targets within the UPS beyond the proteasome itself.
- To highlight intervention strategies upstream of the 26S proteasome.
- To illustrate therapeutic possibilities using NF-kappaB and p53 as examples.
Main Methods:
- Literature review of UPS pathways and drug targets.
- Analysis of ubiquitin-conjugation roles beyond degradation.
- Case studies of NF-kappaB and p53 signaling.
Main Results:
- Identified potential drug targets before substrate recognition by ubiquitin-conjugating enzymes.
- Identified potential drug targets after protein ubiquitination.
- Demonstrated therapeutic relevance in transcription, subcellular distribution, and signal transduction.
Conclusions:
- The UPS offers numerous targets for novel anti-cancer drug development.
- Interventions targeting early or late stages of UPS pathways present promising therapeutic avenues.
- Targeting UPS components upstream of the proteasome provides new strategies for cancer therapy.
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