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Related Concept Videos

Nucleosome Remodeling02:54

Nucleosome Remodeling

Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Chromatin Modification in iPS Cells01:32

Chromatin Modification in iPS Cells

Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Condensins02:15

Condensins

Condensins are large protein complexes that use ATP to fuel the assembly of chromosomes during mitosis. They transform the tangled, shapeless mass of post-interphase DNA into individualized chromosomes by compacting, organizing, and segregating chromosomal DNA.
The plant and animal cells contain two types of condensin complexes—condensin I and condensin II. Both complexes have five subunits: two SMC (Structural Maintenance of Chromosomes) subunits, a kleisin subunit, and two HEAT-repeat...
Forces Acting on Chromosomes02:11

Forces Acting on Chromosomes

During mitosis, chromosome movements occur through the interplay of multiple piconewton level forces. In prometaphase, these forces help in chromosome assembly or congression at the equatorial plane, eventually leading to their alignment at the metaphase plate. The forces acting on the chromosomes are space and time-dependent; therefore, they vary with the position of the chromosomes as the cell progresses through mitosis. 
Microtubules and motor proteins exert two types of forces on...
Forces Acting on Chromosomes02:11

Forces Acting on Chromosomes

During mitosis, chromosome movements occur through the interplay of multiple piconewton level forces. In prometaphase, these forces help in chromosome assembly or congression at the equatorial plane, eventually leading to their alignment at the metaphase plate. The forces acting on the chromosomes are space and time-dependent; therefore, they vary with the position of the chromosomes as the cell progresses through mitosis. 
Microtubules and motor proteins exert two types of forces on...
Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer is an enzyme that can...

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Biochemical Assays for Analyzing Activities of ATP-dependent Chromatin Remodeling Enzymes
10:14

Biochemical Assays for Analyzing Activities of ATP-dependent Chromatin Remodeling Enzymes

Published on: October 25, 2014

ATP-dependent chromatosome remodeling.

Verena K Maier1, Mariacristina Chioda, Peter B Becker

  • 1Adolf-Butenandt Institut, Abt. Molekularbiologie, and Münchner Zentrum für Integrierte Proteinforschung, Ludwig-Maximilian-Universität München, Schillerstrasse 44, D-80336 München, Germany.

Biological Chemistry
|January 23, 2008
PubMed
Summary
This summary is machine-generated.

ATP-dependent remodeling factors dynamically alter chromatin structure for genome stability and accessibility. New research shows these factors can reorganize folded chromatin fibers, impacting euchromatin organization.

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Biochemical Assays for Analyzing Activities of ATP-dependent Chromatin Remodeling Enzymes
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Area of Science:

  • Molecular biology
  • Genetics
  • Epigenetics

Background:

  • Chromatin packaging is essential for eukaryotic genome stability and inheritance.
  • Chromatin must remain dynamic for DNA accessibility during cellular processes.
  • ATP-dependent remodeling factors are key to altering DNA-histone interactions and nucleosome dynamics.

Purpose of the Study:

  • To investigate the action of chromatin remodeling factors in a physiological chromatin environment.
  • To determine if remodeling factors can affect folded chromatin fibers, including those with linker histone H1.

Main Methods:

  • The study likely involved biochemical assays and microscopy to observe chromatin reorganization.
  • Investigated the effects of specific ATP-dependent remodeling factors on chromatin structure.

Main Results:

  • Remodeling factors were found to be active in more complex chromatin structures beyond individual nucleosomes.
  • Evidence suggests these factors can reorganize folded chromatin fibers, even in the presence of linker histone H1.
  • This extends the known scope of chromatin remodeling to bulk euchromatin.

Conclusions:

  • Chromatin remodeling factors possess a broader functional scope than previously understood, influencing larger chromatin structures.
  • These findings have implications for understanding genome accessibility and regulation in euchromatin.