Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Multicompartment Models: Overview01:14

Multicompartment Models: Overview

Multicompartment models are mathematical constructs that depict how drugs are distributed and eliminated within the body. They segment the body into several compartments, symbolizing various physiological or anatomical areas connected through drug transfer processes such as absorption, metabolism, distribution, and elimination.
These models offer a more comprehensive representation of drug behavior in the body than one-compartment models. They accommodate the complexity of drug distribution,...
Mechanistic Models: Overview of Compartment Models01:21

Mechanistic Models: Overview of Compartment Models

Mechanistic models, a category encompassing both physiological and compartmental modeling, differ from empirical models' approaches to incorporating known factors about the systems being modeled. Empirical models describe data with minimal assumptions, while mechanistic models aim to provide a robust description of available data by specifying assumptions and integrating known factors about the system. Compartmental analysis is a key example of a mechanistic model in pharmacokinetics and...
Mechanistic Models: Compartment Models in Individual and Population Analysis01:23

Mechanistic Models: Compartment Models in Individual and Population Analysis

Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least squares (OLS)...
One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation01:24

One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation

This lesson introduces two critical methods in pharmacokinetics, the Wagner-Nelson and Loo-Riegelman methods, used for estimating the absorption rate constant (ka) for drugs administered via non-intravenous routes. The Wagner-Nelson method relates ka to the plasma concentration derived from the slope of a semilog percent unabsorbed time plot. However, it is limited to drugs with one-compartment kinetics and can be impacted by factors like gastrointestinal motility or enzymatic degradation.
On...
Clearance Models: Compartment Models01:25

Clearance Models: Compartment Models

Clearance measures drug elimination from the central compartment, including plasma and highly perfused organs like kidneys and liver. Its calculation varies depending on pharmacokinetic models and administration routes. The one-compartment model, for instance, portrays the pharmacokinetics of polar drugs such as aminoglycoside antibiotics administered intravenously and readily excreted in urine. In this case, clearance is influenced by the terminal rate constant (λz) and the total volume of...
Model Approaches for Pharmacokinetic Data: Compartment Models01:14

Model Approaches for Pharmacokinetic Data: Compartment Models

Compartmental analysis is a widely adopted approach to characterizing drug pharmacokinetics. It uses compartment models that conceptualize the body as a collection of reversibly communicating compartments, each representing a group of tissues exhibiting similar drug distribution characteristics. The movement rate of the drug between these compartments is typically described by first-order kinetics.
Two primary types of compartment models are recognized: mammillary and catenary. The more...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Modelling of the Systemic Inflammatory Host Response in Relation to the Microbiome of the Endodontic Infection.

International endodontic journal·2025
Same author

parafac4microbiome: exploratory analysis of longitudinal microbiome data using parallel factor analysis.

mSystems·2025
Same author

Multi-way modelling of oral microbial dynamics and host-microbiome interactions during induced gingivitis.

NPJ biofilms and microbiomes·2024
Same author

Financial dissatisfaction in people with psychotic disorders - A short report on its prevalence and correlates in a large naturalistic psychosis cohort.

Journal of psychiatric research·2024
Same author

Experienced and inexperienced observers achieved relatively high within-observer agreement on video mobility scoring of dairy cows.

Journal of dairy science·2015
Same author

Maternal obesity and offspring dietary patterns at 9 months of age.

European journal of clinical nutrition·2014

Related Experiment Video

Updated: Jul 8, 2026

An R-Based Landscape Validation of a Competing Risk Model
05:37

An R-Based Landscape Validation of a Competing Risk Model

Published on: September 16, 2022

Cross-validation of component models: a critical look at current methods.

R Bro1, K Kjeldahl, A K Smilde

  • 1Chemometrics Group, Faculty of Life Sciences, University of Copenhagen, 1958, Frederiksberg C, Denmark. rb@life.ku.dk

Analytical and Bioanalytical Chemistry
|January 25, 2008
PubMed
Summary

Cross-validation for principal component analysis (PCA) is often implemented incorrectly, failing to ensure independent predictions. This review assesses common PCA cross-validation methods and their performance in different situations.

More Related Videos

A Rapid Method for Modeling a Variable Cycle Engine
04:58

A Rapid Method for Modeling a Variable Cycle Engine

Published on: August 13, 2019

Cross-Modal Multivariate Pattern Analysis
13:51

Cross-Modal Multivariate Pattern Analysis

Published on: November 9, 2011

Related Experiment Videos

Last Updated: Jul 8, 2026

An R-Based Landscape Validation of a Competing Risk Model
05:37

An R-Based Landscape Validation of a Competing Risk Model

Published on: September 16, 2022

A Rapid Method for Modeling a Variable Cycle Engine
04:58

A Rapid Method for Modeling a Variable Cycle Engine

Published on: August 13, 2019

Cross-Modal Multivariate Pattern Analysis
13:51

Cross-Modal Multivariate Pattern Analysis

Published on: November 9, 2011

Area of Science:

  • Statistics
  • Machine Learning
  • Data Analysis

Background:

  • Cross-validation is a standard technique in regression for model selection and error estimation.
  • Its application to component models like Principal Component Analysis (PCA) is less standardized.
  • Current PCA cross-validation methods often violate the independence of predictions from the predicted components.

Purpose of the Study:

  • To review commonly used generic cross-validation schemes for Principal Component Analysis (PCA).
  • To assess the performance and validity of these PCA cross-validation methods across various scenarios.
  • To highlight the importance of independent predictions in PCA cross-validation.

Main Methods:

  • Literature review of existing generic PCA cross-validation techniques.
  • Assessment of these methods' adherence to the principle of independent predictions.
  • Empirical evaluation of method performance in diverse analytical contexts.

Main Results:

  • Most current PCA cross-validation implementations do not guarantee prediction independence.
  • The reviewed methods exhibit varying degrees of effectiveness depending on the specific scenario.
  • A lack of thorough literature review on PCA cross-validation has been identified.

Conclusions:

  • Existing generic cross-validation schemes for PCA require careful scrutiny due to potential violations of independence.
  • Further research and standardized practices are needed for reliable PCA cross-validation.
  • Selecting appropriate PCA cross-validation methods is crucial for accurate model evaluation and feature selection.