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Related Concept Videos

Ligand Binding Sites02:40

Ligand Binding Sites

Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Aquaporins01:25

Aquaporins

Aquaporins or AQPs are a family of integral membrane proteins whose primary function is to transport water, while some called aquaglyceroporins also transport glycerol. In addition, aquaporins have also been suspected to be involved in transporting volatile substances, such as carbon dioxide and ammonia, across membranes. Such AQPs that act as gas channels are often highly expressed in cells involved in the gaseous exchange, such as red blood cells, epithelial cells, and pulmonary capillaries.
Ligand Binding and Linkage00:49

Ligand Binding and Linkage

Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence the...
Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis pathway,...
Conserved Binding Sites01:49

Conserved Binding Sites

Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Protein-protein Interfaces02:04

Protein-protein Interfaces

Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a polypeptide...

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Related Experiment Video

Updated: Jul 7, 2026

Determining the Ice-binding Planes of Antifreeze Proteins by Fluorescence-based Ice Plane Affinity
08:46

Determining the Ice-binding Planes of Antifreeze Proteins by Fluorescence-based Ice Plane Affinity

Published on: January 15, 2014

Hyperactive antifreeze protein from fish contains multiple ice-binding sites.

Laurie A Graham1, Christopher B Marshall, Feng-Hsu Lin

  • 1Department of Biochemistry and Protein Function Discovery Group, Queen's University, Kingston, Ontario, Canada K7L 3N6.

Biochemistry
|January 30, 2008
PubMed
Summary

Researchers discovered a hyperactive antifreeze protein (AFP) in winter flounder, which is significantly more active than other fish AFPs. This hyperactive type I AFP (hyp-type I) has a unique dimeric structure that enhances its ice-binding capabilities.

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Last Updated: Jul 7, 2026

Determining the Ice-binding Planes of Antifreeze Proteins by Fluorescence-based Ice Plane Affinity
08:46

Determining the Ice-binding Planes of Antifreeze Proteins by Fluorescence-based Ice Plane Affinity

Published on: January 15, 2014

Identification of Plant Ice-binding Proteins Through Assessment of Ice-recrystallization Inhibition and Isolation Using Ice-affinity Purification
09:43

Identification of Plant Ice-binding Proteins Through Assessment of Ice-recrystallization Inhibition and Isolation Using Ice-affinity Purification

Published on: May 5, 2017

LabVIEW-operated Novel Nanoliter Osmometer for Ice Binding Protein Investigations
09:32

LabVIEW-operated Novel Nanoliter Osmometer for Ice Binding Protein Investigations

Published on: February 4, 2013

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Evolutionary Biology

Background:

  • Antifreeze proteins (AFPs) are crucial for fish survival in icy marine environments.
  • Diverse, nonhomologous AFPs exist, sharing the function of ice-binding and growth inhibition.
  • Previous research identified various AFP types with different sequences and structures.

Purpose of the Study:

  • To investigate a newly discovered hyperactive AFP from winter flounder.
  • To understand the structure and evolutionary origins of this hyperactive AFP.
  • To elucidate the molecular mechanisms behind its enhanced antifreeze activity.

Main Methods:

  • cDNA sequencing of the hyperactive AFP.
  • Structural modeling based on amino acid sequence.
  • Comparison of hyp-type I AFP with known type I AFPs.

Main Results:

  • A hyperactive 17-kDa AFP, designated hyperactive type I AFP (hyp-type I), was identified in winter flounder.
  • The hyp-type I AFP gene is homologous to righteye flounder type I AFP genes.
  • Structural analysis suggests a dimeric structure with extensive ice-binding surfaces.

Conclusions:

  • The hyperactive type I AFP exhibits superior antifreeze activity compared to other fish AFPs.
  • Its enhanced function is likely due to a larger surface area of ice-binding sites and multi-plane ice recognition.
  • The study provides insights into AFP evolution and structure-function relationships.