Related Experiment Video
Updated: Jul 7, 2026

Generation of High Quality Chromatin Immunoprecipitation DNA Template for High-throughput Sequencing (ChIP-seq)
Published on: April 19, 2013
Microarray analysis in B cells among siblings with/without MS - role for transcription factor TCF2.
Jagannadha R Avasarala1, Sridar V Chittur, Ajish D George
1Multiple Sclerosis Specialty Care, Kansas Neurological Consultants, PA, Wichita, KS 67218, USA. javasarala@yahoo.com
Gene expression in B-lymphocytes differs between siblings with multiple sclerosis (MS) and healthy individuals. Key genes and transcription factors, including transcription factor 2 (TCF2), show altered regulation in MS patients, suggesting potential new therapeutic targets.
Area of Science:
- Immunology
- Genetics
- Neuroscience
Background:
- Multiple sclerosis (MS) is a complex neurological disease.
- Investigating genetic differences in B-lymphocytes may reveal disease mechanisms.
- Sibling studies can help differentiate genetic and environmental factors in MS.
Purpose of the Study:
- To compare global gene expression and transcription networks in B-lymphocytes between siblings with MS and healthy siblings.
- To identify specific genes and transcription factors with altered expression in MS.
- To explore the potential role of transcription factor 2 (TCF2) in MS pathogenesis.
Main Methods:
- Utilized virus-transformed immortalized B cells from siblings.
- Employed human whole genome bioarrays for gene expression analysis.
- Validated findings using reverse transcription quantitative polymerase chain reaction (RT-qPCR).
Main Results:
- Identified differential gene expression in B-lymphocytes of siblings with MS compared to healthy siblings.
- Observed upregulation of CXCL10, serpin B1, and FUT4, and downregulation of CDC5L, TNFRSF19, and HLA-DR.
- Discovered two intersecting transcription factor networks, one regulated by upregulated transcription factor 2 (TCF2) and another by downregulated CDC5L.
Conclusions:
- This study is the first to link TCF2 to multiple sclerosis (MS).
- Altered gene expression and transcription networks in B-lymphocytes suggest a role for TCF2 in MS.
- Further research in larger cohorts is necessary to elucidate the role of TCF2 in MS.
Related Concept Videos
General Transcription Factors
Combinatorial Gene Control
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
Master Transcription Regulators
Transcription Factors
DNA Microarrays
Chromatin Position Affects Gene Expression
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the timing and level of...
