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Related Experiment Video

Updated: Jul 7, 2026

Combining Analysis of DNA in a Crude Virion Extraction with the Analysis of RNA from Infected Leaves to Discover New Virus Genomes

Combining Analysis of DNA in a Crude Virion Extraction with the Analysis of RNA from Infected Leaves to Discover New Virus Genomes

Published on: July 27, 2018

The VirusBanker database uses a Java program to allow flexible searching through Bunyaviridae sequences.

Mathieu Fourment¹, Mark J Gibbs

¹Department of Biological Sciences, Macquarie University, Sydney NSW 2109, Australia. m.fourment@gmail.com

BMC Bioinformatics

|February 7, 2008

Summary

This summary is machine-generated.

VirusBanker is a new database for Bunyaviridae virus sequences. It allows researchers to easily sort and analyze viral genetic data, improving the study of these disease-causing viruses.

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Last Updated: Jul 7, 2026

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Area of Science:

Virology
Bioinformatics

Background:

Bunyaviridae viruses possess segmented negative-stranded RNA genomes and are significant pathogens.
Existing GenBank searches for Bunyaviridae sequences yield complex and potentially limiting results.
Current HTML-based database interfaces can hinder comprehensive exploration of sequence data.

Purpose of the Study:

To develop an efficient database system for Bunyaviridae sequences.
To provide a user-friendly platform for sorting and analyzing viral genetic information.
To facilitate the study of Bunyaviridae viruses through improved data accessibility.

Main Methods:

Developed the VirusBanker database using a Java program interacting with a MySQL server.
Presented Bunyaviridae sequences and alignments in two interactive spreadsheets.
Enabled sorting via columns including segment, gene, protein, species, strain, and isolation details.

Main Results:

VirusBanker provides a searchable repository of Bunyaviridae nucleotide and protein sequences.
Users can sort sequences using various metadata criteria for targeted analysis.
Data can be downloaded or viewed directly in the Jalview sequence editor.

Conclusions:

VirusBanker enables rapid compilation and filtering of large Bunyaviridae sequence datasets.
The database allows for heuristic criteria-based analysis of viral genetic information.
This tool enhances the ability to study Bunyaviridae viruses through efficient data management.