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LibSBML: an API library for SBML.

Benjamin J Bornstein1, Sarah M Keating, Akiya Jouraku

  • 1NASA Jet Propulsion Laboratory, Biological Network Modeling Center, California Institute of Technology, Pasadena, CA, USA.

Bioinformatics (Oxford, England)
|February 7, 2008
PubMed
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LibSBML is a C++ library that simplifies working with Systems Biology Markup Language (SBML) files. It offers tools for reading, writing, and validating SBML data, aiding systems biology research.

Area of Science:

  • Systems Biology
  • Bioinformatics
  • Computational Biology

Background:

  • LibSBML is a widely used application programming interface (API) library.
  • It supports the Systems Biology Markup Language (SBML) standard.
  • LibSBML 3 was released in August 2007 and is available under LGPL license.

Purpose of the Study:

  • To provide a robust and efficient library for handling SBML data.
  • To facilitate the development of applications in systems biology.
  • To simplify the process of parsing, manipulating, and validating SBML files.

Main Methods:

  • Written in ISO C and C++.
  • Offers language bindings for multiple programming languages including Java, Python, and MATLAB.
  • Includes comprehensive features for SBML data management.

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Main Results:

  • Enables developers to embed SBML functionality directly into their applications.
  • Reduces the need for developers to implement custom SBML parsing and validation routines.
  • Facilitates broader adoption and use of SBML in the scientific community.

Conclusions:

  • LibSBML serves as a foundational tool for systems biology research.
  • Its comprehensive features and accessibility promote efficient SBML data handling.
  • The library empowers researchers and developers to focus on biological modeling rather than data format intricacies.