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Updated: Jul 7, 2026

Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
Novel intestinal splice variants of RNA-binding protein CUGBP2: isoform-specific effects on mitotic catastrophe
Satish Ramalingam1, Gopalan Natarajan, Chris Schafer
1Dept. of Medicine, Univ. of Oklahoma Health Sciences Ctr., 920 Stanton L. Young Blvd., WP1360, Oklahoma City, OK 73126, USA.
Abstract:
CUG triplet repeat-binding protein 2 (CUGBP2) is a RNA-binding protein that regulates mRNA translation and modulates apoptosis. Here, we report the identification of two splice variants (termed variants 2 and 3) in cultured human intestinal epithelial cells and in mouse gastrointestinal tract. The variants are generated from alternative upstream promoters resulting in the inclusion of additional NH(2)-terminal residues. Although variant 2 is the predominant isoform in normal intestine, its expression is reduced, whereas variant 1 is overexpressed following gamma-irradiation. All three variants bind cyclooxygenase-2 (COX-2) mRNA. However, only variant 1 inhibits the translation of the endogenous COX-2 mRNA and a chimeric luciferase mRNA containing the COX-2 3'untranslated region. Furthermore, whereas variant 1 is predominantly nuclear, variants 2 and 3 are predominantly cytoplasmic. These data imply that the additional amino acids affect CUGBP2 function. Previous studies have demonstrated that variant 1 induces intestinal epithelial cells to undergo apoptosis. However, in contrast to variant 1, the two novel variants do not affect proliferation or apoptosis of HCT116 cells. In addition, only variant 1 induced G(2)/M cell cycle arrest, which was overcome by prostaglandin E(2). Moreover, variant 1 increased cellular levels of phosphorylated p53 and Bax and decreased Bcl2. Caspase-3 and -9 were also activated, suggesting the initiation of the intrinsic apoptotic pathway. Furthermore, increased phosphorylation of checkpoint kinase (Chk)1 and Chk2 kinases and increased nuclear localization of Cdc2 and cyclin B1 suggested that cells were in mitotic transition. Taken together, these data demonstrate that cells expressing CUGBP2 variant 1 undergo apoptosis during mitosis, suggesting mitotic catastrophe.
Insights
Two new splice variants of CUG triplet repeat-binding protein 2 (CUGBP2) were identified. Only variant 1, which is nuclear, induces apoptosis and mitotic catastrophe in intestinal cells, unlike cytoplasmic variants 2 and 3.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- CUG triplet repeat-binding protein 2 (CUGBP2) is an RNA-binding protein involved in mRNA translation and apoptosis.
- Alternative splicing generates different CUGBP2 isoforms with potentially distinct functions.
- Understanding CUGBP2 variant function is crucial for comprehending cellular regulation and disease.
Purpose of the Study:
- To identify and characterize novel splice variants of CUGBP2.
- To investigate the differential functions of CUGBP2 variants, particularly concerning apoptosis and cell cycle regulation.
- To elucidate the role of CUGBP2 variants in intestinal epithelial cells and their response to genotoxic stress.
Main Methods:
- Identification of CUGBP2 splice variants in human intestinal cells and mouse gastrointestinal tract.
- Analysis of variant expression levels under normal and gamma-irradiated conditions.
- Assessment of mRNA translation inhibition, cellular localization, proliferation, apoptosis, and cell cycle progression assays.
- Western blot analysis to determine protein levels and phosphorylation status of key apoptosis and cell cycle regulators.
Main Results:
- Two novel CUGBP2 splice variants (variants 2 and 3) with additional N-terminal residues were identified.
- Variant 2 is predominant in normal intestine, while variant 1 is overexpressed post-irradiation; variants 2 and 3 are cytoplasmic, variant 1 is nuclear.
- Only variant 1 inhibits cyclooxygenase-2 (COX-2) mRNA translation and induces G(2)/M cell cycle arrest, apoptosis, and mitotic catastrophe.
- Variant 1 activates caspases-3 and -9, increases p53 and Bax, decreases Bcl2, and affects mitotic regulators like Chk1/2, Cdc2, and cyclin B1.
Conclusions:
- The novel CUGBP2 variants (2 and 3) possess distinct cellular localization and functional properties compared to variant 1.
- CUGBP2 variant 1 induces apoptosis during mitosis, potentially through mitotic catastrophe, a process influenced by prostaglandin E2.
- Differential expression and function of CUGBP2 variants highlight their complex roles in intestinal cell biology and response to DNA damage.
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