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Updated: Jul 7, 2026

Constructing Mutants in Serotype 1 Streptococcus pneumoniae strain 519/43
Published on: September 11, 2020
Streptococcus pneumoniae contains 3 rlrA pilus variants that are clonally related
Monica Moschioni1, Claudio Donati, Alessandro Muzzi
1Novartis Vaccines, Siena, Italy.
Background:
Pilus components of Streptococcus pneumoniae encoded by rlrA were recently shown to elicit protection in an animal model of infection. Limited data are available on the prevalence of the rlrA operon in pneumococci; therefore, we investigated its distribution and its antigenic variation among disease-causing strains.
Methods:
The prevalence of rlrA and its association with serotype and genotype were evaluated in a global panel of 424 pneumococci isolates (including the 26 drug-resistant clones described by the Pneumococcal Molecular Epidemiology Network).
Results:
The rlrA islet was found in 130 isolates (30.6%) of the defined collection. Sequence alignment of 15 rlrA islets defined the presence of 3 clade types, with an overall homology of 88%-92%. The presence or absence of a pilus-encoding operon correlated with S. pneumoniae genotype (P < .001), as determined by multilocus sequence typing, and not with serotype. Further investigation identified a positive trend of rlrA occurrence among antimicrobial-resistant pneumococci.
Conclusions:
On the basis of S. pneumoniae genotype, it is possible to predict the incidence of the rlrA pilus operon in a collection of pneumococcal isolates. This will facilitate the development of a protein vaccine.
Insights
The rlrA pilus operon, found in 30.6% of Streptococcus pneumoniae isolates, is linked to specific bacterial genotypes. This finding aids in predicting its presence for developing new protein vaccines against pneumococcal infections.
Area of Science:
- Microbiology
- Vaccinology
- Genetics
Background:
- Pilus components of Streptococcus pneumoniae encoded by rlrA show protective potential in animal models.
- Limited data exist on the prevalence and variation of the rlrA operon in disease-causing pneumococcal strains.
Purpose of the Study:
- To investigate the distribution and antigenic variation of the rlrA operon in a global collection of Streptococcus pneumoniae isolates.
- To determine the association of rlrA prevalence with pneumococcal serotype and genotype.
Main Methods:
- Evaluated the prevalence of rlrA in 424 pneumococcal isolates using multilocus sequence typing.
- Analyzed sequence variation within the rlrA operon across different isolates.
- Correlated rlrA presence with pneumococcal serotype and genotype.
Main Results:
- The rlrA islet was detected in 30.6% of the isolates, with 3 distinct clade types identified.
- The presence of the pilus-encoding operon significantly correlated with Streptococcus pneumoniae genotype (P < .001), but not serotype.
- A positive trend was observed for rlrA occurrence in antimicrobial-resistant pneumococci.
Conclusions:
- Pneumococcal genotype can predict the incidence of the rlrA pilus operon.
- This predictability is valuable for the development of novel protein-based vaccines against Streptococcus pneumoniae.
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