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Characterization of a Pathogenic Escherichia coli Strain Derived from Oreochromis spp. Farms Using Whole-Genome Sequencing
Published on: December 23, 2022
Streptococcus phocae, an emerging pathogen for salmonid culture.
Jesús L Romalde1, Carmen Ravelo, Iván Valdés
1Departamento de Microbiología y Parasitología, Facultad de Biología, Universidad de Santiago de Compostela, 15782 Santiago de Compostela, Spain. mpromald@usc.es
Veterinary Microbiology
|February 19, 2008
Summary
Streptococcus phocae caused significant mortality in Chilean Atlantic salmon farm outbreaks since 1999. This emerging pathogen, identified through 16S rRNA sequencing, requires new control strategies for salmonid aquaculture.
Area of Science:
- Aquatic Animal Health
- Bacteriology
- Fish Pathology
Background:
- Recurrent summer disease outbreaks in Chilean Atlantic salmon (Salmo salar) cage culture since 1999.
- Affected fish exhibited clinical signs including exophthalmia, hemorrhages, and pathological changes in internal organs.
- Previous investigations suggested potential Gemella genus involvement based on biochemical tests.
Purpose of the Study:
- To identify the causal agent of disease outbreaks in farmed Atlantic salmon in Chile.
- To characterize the identified bacterial pathogen and assess its relationship to known streptococcosis agents.
- To evaluate the antigenic properties of the isolates for potential vaccine development.
Main Methods:
- Isolation and characterization of bacterial pathogens from diseased salmon.
- Biochemical identification using the rapid ID 32 Strep system.
- Molecular identification via 16S rRNA gene sequencing and Restriction Fragment Length Polymorphism (RFLP) analysis.
- Serological studies to determine antigenic relationships.
Main Results:
- Gram-positive cocci were consistently found in affected fish.
- Biochemical tests initially suggested Gemella, but 16S rRNA sequencing identified the pathogen as Streptococcus phocae.
- All salmon isolates were antigenically homogeneous but distinct from seal-derived strains.
- The bacterium is associated with significant cumulative mortality (up to 25%) in salmonids.
Conclusions:
- Streptococcus phocae is identified as the emerging causal agent of significant disease outbreaks in Chilean salmonid aquaculture.
- The findings necessitate the inclusion of S. phocae in the understanding of warm water streptococcosis in farmed salmon.
- Antigenic homogeneity suggests potential for developing targeted preventive measures, such as vaccines.
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