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Related Experiment Video

Updated: Jul 7, 2026

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

Published on: December 22, 2017

The EMBL Nucleotide Sequence and Genome Reviews Databases.

Peter Sterk¹, Tamara Kulikova, Paul Kersey

¹EMBL-Outstation The European Bioinformatics Institute, Welcome Trust Genome Campus, Hinxton, Cambridge, UK.

Methods in Molecular Biology (Clifton, N.J.)

|February 22, 2008

Summary

This chapter details the European Molecular Biology Laboratory (EMBL) Nucleotide Sequence Database and Genome Reviews. These resources facilitate access to plant nucleotide sequences and genomic information for research.

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Novel Sequence Discovery by Subtractive Genomics

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Last Updated: Jul 7, 2026

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

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Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information

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Novel Sequence Discovery by Subtractive Genomics

Novel Sequence Discovery by Subtractive Genomics

Published on: January 25, 2019

Area of Science:

Bioinformatics
Genomics
Molecular Biology

Background:

Nucleotide and protein sequence databases are crucial resources for biological and medical research.
Primary data archives store raw sequence information, while secondary databases offer curated and annotated views.

Purpose of the Study:

Introduce the European Molecular Biology Laboratory (EMBL) Nucleotide Sequence Database as a primary archive.
Describe Genome Reviews as a secondary database for annotated genomic sequences.
Demonstrate data access, similarity searches, and information retrieval using Integr8, focusing on plant sequences.

Main Methods:

Utilizing the EMBL Nucleotide Sequence Database for primary data.
Accessing Genome Reviews for standardized, annotated genomic information.
Employing the Integr8 system for data exploration and analysis.

Main Results:

Demonstrated methods for accessing plant nucleotide sequences.
Illustrated sequence similarity search functionalities.
Showcased the retrieval of comprehensive genomic information via Integr8.

Conclusions:

The EMBL Nucleotide Sequence Database and Genome Reviews are vital for accessing and analyzing genomic data.
Integr8 provides a powerful platform for exploring plant genomic sequences and related information.