Related Experiment Video
Updated: Jul 7, 2026

08:47
Monitoring eIF4F Assembly by Measuring eIF4E-eIF4G Interaction in Live Cells
Published on: May 1, 2020
PDCD4 inhibits translation initiation by binding to eIF4A using both its MA3 domains
Chikako Suzuki1, Robert G Garces, Katherine A Edmonds
1Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Summary
Programmed Cell Death 4 (PDCD4) protein inhibits translation by binding eukaryotic initiation factor 4A (eIF4A). Its two MA3 domains work together to displace other factors, suppressing tumor growth.
Area of Science:
- Molecular Biology
- Structural Biology
- Cancer Research
Background:
- Programmed Cell Death 4 (PDCD4) is a tumor suppressor protein.
- PDCD4 inhibits translation initiation by binding eukaryotic initiation factor 4A (eIF4A).
- PDCD4's C-terminal MA3 domains are implicated in its inhibitory function.
Purpose of the Study:
- To analyze the structures and inhibitory functions of PDCD4's two MA3 domains.
- To elucidate the mechanism by which PDCD4 inhibits translation initiation.
Main Methods:
- X-ray crystallography
- Nuclear Magnetic Resonance (NMR) spectroscopy
- Surface Plasmon Resonance (SPR)
Main Results:
- Both PDCD4 MA3 domains exhibit structural and functional similarity.
- PDCD4 MA3 domains bind specifically to the N-terminal domain of eIF4A (eIF4A-NTD) at conserved interfaces.
- PDCD4 MA3 domains compete with eIF4G MA3 domain and RNA for eIF4A binding.
- PDCD4 inhibits translation by displacing eIF4G and RNA from eIF4A.
- The two PDCD4 MA3 domains act synergistically for enhanced binding to eIF4A.
Conclusions:
- PDCD4 inhibits translation initiation through competitive binding and displacement of eIF4G and RNA from eIF4A.
- The synergistic action of the two MA3 domains contributes to the stable inhibition of eIF4A.
- Understanding PDCD4's mechanism provides insights into cancer development and potential therapeutic targets.
Related Concept Videos
Eukaryotic Transcription Inhibitors
Certain biochemical processes, such as embryonic development and cell growth regulation, depend on the repression of specific genes. DNA binding proteins known as eukaryotic transcription inhibitors regulate the repression of gene expression in eukaryotes. The presence of these inhibitors at the required location and time in the cell is triggered by the presence of hormones and additional signals from other cells.
Eukaryotic transcription inhibitors usually contain two distinct domains, a DNA...
Eukaryotic transcription inhibitors usually contain two distinct domains, a DNA...
Initiation of Translation
Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
Initiation of Translation
Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
Improving Translational Accuracy
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
Inhibitors of Viral Protein Synthesis
Protein synthesis is indispensable for viral replication, as viruses lack the cellular machinery required for this process and must hijack the host's translational apparatus. In response, host cells deploy a critical innate immune defense involving interferons, specialized cytokines that play a central role in inhibiting viral propagation.Upon viral detection, infected cells release interferons that bind to receptors on adjacent uninfected cells, activating the JAK-STAT signaling pathway and...
Leaky Scanning
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R stands for...

