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Related Concept Videos

Riboswitches01:56

Riboswitches

Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosome Profiling02:24

Ribosome Profiling

Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Epistasis01:39

Epistasis

In addition to multiple alleles at the same locus influencing traits, numerous genes or alleles at different locations may interact and influence phenotypes in a phenomenon called epistasis. For example, rabbit fur can be black or brown depending on whether the animal is homozygous dominant or heterozygous at a TYRP1 locus. However, if the rabbit is also homozygous recessive at a locus on the tyrosinase gene (TYR), it will have an unshaded coat that appears white, regardless of its TYRP1...
piRNA - Piwi-interacting RNAs02:57

piRNA - Piwi-interacting RNAs

PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...

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Investigating Interactions Between Histone Modifying Enzymes and Transcription Factors in vivo by Fluorescence Resonance Energy Transfer
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Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins.

Violaine Pinon1, J Peter Etchells, Pascale Rossignol

  • 1Department of Crop Genetics, John Innes Centre, Norwich NR4 7UH, UK.

Development (Cambridge, England)
|February 29, 2008
PubMed
Summary
This summary is machine-generated.

Three new genes, PIGGYBACK (PGY1-3), impact leaf patterning by interacting with key polarity pathways. These ribosomal proteins suggest translation regulates plant development.

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Area of Science:

  • Plant Biology
  • Developmental Biology
  • Genetics

Background:

  • Leaves develop polarity through gene interactions specifying adaxial (dorsal) and abaxial (ventral) fates.
  • ASYMMETRIC LEAVES1 (AS1) is a transcription factor involved in leaf polarity, but other pathways exist, especially in Arabidopsis.

Purpose of the Study:

  • To identify novel genes involved in leaf patterning and dorsoventral polarity in Arabidopsis.
  • To understand the genetic interactions regulating leaf development beyond the known AS1 pathway.

Main Methods:

  • Mutagenesis screens in an as1 mutant background to identify genes affecting leaf patterning.
  • Genetic analysis, including epistasis tests with known polarity genes like REVOLUTA (REV) and KANADI (KAN).
  • Identification of the molecular function of the identified genes.

Main Results:

  • Three new genes, PIGGYBACK1 (PGY1), PGY2, and PGY3, were identified; their mutants exhibit ectopic outgrowths on the adaxial leaf side in an as1 background.
  • The leaf patterning defects were modulated by mutations in HD-ZIPIII (REV) and KANADI genes, indicating interaction with this pathway.
  • PGY1, PGY2, and PGY3 encode ribosomal proteins (RPL10a, RPL9, and RPL5), suggesting a role for translation in leaf polarity.

Conclusions:

  • The PGY genes are crucial regulators of leaf dorsoventral patterning, interacting with the established HD-ZIPIII-KANADI genetic network.
  • This study reveals a novel role for translation and ribosomal proteins in controlling key plant developmental patterning events.