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Updated: Jul 6, 2026

Identification of Transcription Factor Regulators using Medium-Throughput Screening of Arrayed Libraries and a Dual-Luciferase-Based Reporter
Published on: March 27, 2020
Modulation of drug resistance by artificial transcription factors
Pilar Blancafort1, Mario P Tschan, Sharon Bergquist
1Department of Molecular Biology and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Abstract:
The efficiency of chemotherapeutic treatments in cancer patients is often impaired by the acquisition of drug resistance. Cancer cells develop drug resistance through dysregulation of one or more genes or cellular pathways. To isolate efficient regulators of drug resistance in tumor cells, we have adopted a genome-wide scanning approach based on the screening of large libraries of artificial transcription factors (ATFs) made of three and six randomly assembled zinc finger domains. Zinc finger libraries were linked to a VP64 activation domain and delivered into a paclitaxel-sensitive tumor cell line. Following drug treatment, several ATFs were isolated that promoted drug resistance. One of these ATFs, 3ZF-1-VP, promoted paclitaxel resistance in cell lines having mutated or inactivated p53, such as MDA-MB-435 and Kaposi's sarcoma cell lines. 3ZF-1-VP also induced strong resistance to etoposide, vincristine, and cisplatinum. Linkage of a repression domain to the selected ATF resulted in enhanced sensitivity to multiple drugs, particularly vincristine, cisplatinum, and 5-fluorouracil. Small interfering RNA-mediated inhibition of p53 revealed that 3ZF-1-VP activated both p53-dependent and p53-independent mechanisms to promote survival, whereas other ATF required intact p53. Real-time expression analysis and DNA microarrays showed that several ATFs up-regulated targets of p53, such as the cyclin-dependent kinase inhibitor p21(WAF1/CIP1), and genes participating in the p14(ARF)-MDM2-p53 tumor suppressor pathway, such as hDMP1. Thus, ATF can be used to map genes and pathways involved in drug resistance phenotypes and have potential as novel therapeutic agents to inhibit drug resistance.
Insights
Researchers developed artificial transcription factors (ATFs) to combat cancer drug resistance. One ATF, 3ZF-1-VP, effectively induced resistance to multiple chemotherapy drugs, offering new therapeutic potential.
Area of Science:
- Cancer Biology
- Molecular Oncology
- Drug Discovery
Background:
- Chemotherapy resistance significantly limits cancer treatment efficacy.
- Drug resistance arises from genetic and pathway dysregulation in cancer cells.
Purpose of the Study:
- To identify novel regulators of drug resistance using a genome-wide screening approach.
- To explore the therapeutic potential of artificial transcription factors (ATFs) in overcoming chemotherapy resistance.
Main Methods:
- Screening of large libraries of artificial transcription factors (ATFs) composed of zinc finger domains linked to activation domains.
- Delivery of ATFs into paclitaxel-sensitive tumor cell lines followed by drug treatment.
- Analysis of ATF-mediated drug resistance, including p53 dependency, gene expression profiling, and drug sensitivity assays.
Main Results:
- Several ATFs were identified that confer resistance to chemotherapy drugs.
- A specific ATF, 3ZF-1-VP, induced resistance to paclitaxel, etoposide, vincristine, and cisplatinum, even in p53-mutated cell lines.
- ATFs modulated p53-dependent and p53-independent survival pathways, upregulating targets like p21(WAF1/CIP1) and hDMP1.
Conclusions:
- Artificial transcription factors can effectively map genes and pathways involved in cancer drug resistance.
- ATFs demonstrate potential as novel therapeutic agents to overcome or modulate drug resistance in cancer treatment.
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