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Updated: Jul 6, 2026

The 3D Culturing of Organoids from Murine Intestinal Crypts and a Single Stem Cell for Organoid Research
Published on: April 7, 2023
Current view: intestinal stem cells and signaling
David H Scoville1, Toshiro Sato, Xi C He
1Stowers Institute for Medical Research, Kansas City, Missouri, USA.
Abstract:
Studies using mice have yielded significant amounts of information regarding signaling pathways, such as Wnt, bone morphogenic protein, PtdIns(3,4,5) kinase, and Notch, involved in intestinal development and homeostasis, including stem cell regulation and lineage specification and maturation. However, attempts to model signals definitively that control intestinal stem cells have been difficult because of a long-standing and recently reenergized debate surrounding their location. Although crypt-based columnar cells have been recently shown to display self-renewal and multipotential capacity, a large body of evidence supports long-term label-retaining cells, located on average at the +4 position just above the Paneth cells, as putative stem cells. Herein, we propose that both these cell types represent true intestinal stem cells maintained in different states (quiescent vs actively cycling), presumably via interactions with different microenvironments. Finally, we review current findings regarding the roles of Wnt, bone morphogenic protein, PtdIns(3,4,5) kinase, and Notch pathways within the intestine.
Insights
Two types of intestinal stem cells, actively cycling and quiescent, likely exist in different microenvironments, regulating gut development and homeostasis. Signaling pathways like Wnt and Notch are crucial for their function.
Area of Science:
- Gastroenterology
- Developmental Biology
- Cell Biology
Background:
- Signaling pathways (Wnt, BMP, PI3K, Notch) are vital for intestinal development and homeostasis.
- The precise location and nature of intestinal stem cells remain debated.
- Recent studies suggest both crypt-based columnar cells and +4 position label-retaining cells may be stem cells.
Purpose of the Study:
- To propose a unified model for intestinal stem cell regulation.
- To reconcile conflicting evidence regarding stem cell location.
- To review the roles of key signaling pathways in intestinal stem cell function.
Main Methods:
- Literature review of studies on mouse intestinal development and stem cell biology.
- Analysis of evidence supporting different putative intestinal stem cell populations.
- Synthesis of findings on signaling pathway involvement.
Main Results:
- Evidence supports two distinct intestinal stem cell populations: actively cycling crypt-based columnar cells and quiescent +4 position cells.
- These populations likely represent the same stem cells in different functional states.
- Interactions with distinct microenvironments may maintain these different states.
Conclusions:
- Intestinal stem cell function is regulated by distinct populations in different microenvironmental niches.
- Key signaling pathways (Wnt, BMP, PI3K, Notch) play critical roles in maintaining intestinal homeostasis.
- A unified model encompassing both cell types provides a more comprehensive understanding of intestinal stem cell regulation.
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