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Updated: Jul 6, 2026

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High Resolution Whole Mount In Situ Hybridization within Zebrafish Embryos to Study Gene Expression and Function
Published on: October 19, 2013
Regulation and function of foxe3 during early zebrafish development
Eric C Swindell1, Carolyn A Zilinski, Ryuju Hashimoto
1Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
Summary
Zebrafish foxe3 gene expression is regulated by KLF4, hedgehog, and nodal pathways. foxe3 is essential for lens development and gene expression, with its knockdown causing lens defects.
Area of Science:
- Developmental Biology
- Genetics
- Molecular Biology
Background:
- The forkhead gene foxe3 plays a crucial role in embryonic development.
- Understanding foxe3's regulation and function is key to comprehending developmental processes.
Purpose of the Study:
- To investigate the expression patterns of the zebrafish foxe3 gene.
- To elucidate the regulatory mechanisms controlling foxe3.
- To determine the functional significance of foxe3 in embryonic development, particularly in lens formation.
Main Methods:
- Analysis of foxe3 expression in wild-type zebrafish embryos at various developmental stages.
- Utilized morpholinos to knockdown zinc finger Kruppel-like factor 4 (KLF4) and assess its effect on foxe3 expression.
- Examined foxe3 expression in hedgehog and nodal signaling pathway mutants (iguana, you-too, cyclops).
- Assessed the impact of foxe3 knockdown on lens-specific gene expression (pdgfralpha) and lens morphogenesis.
Main Results:
- foxe3 is expressed in the polster, hatching gland, lens, and anterior pituitary of zebrafish embryos.
- KLF4 differentially regulates foxe3 expression: required for polster expression but not lens placode expression.
- foxe3 expression is sensitive to disruptions in hedgehog and nodal signaling pathways.
- Knockdown of foxe3 leads to loss of pdgfralpha expression and lens vacuolization, indicating impaired lens development.
Conclusions:
- Zebrafish foxe3 expression is precisely regulated by developmental signaling pathways, including KLF4, hedgehog, and nodal.
- foxe3 is indispensable for proper lens development, regulating key genes and morphogenesis.
- This study provides critical insights into the genetic control of eye development.

