SUMOylation of the hepatoma-derived growth factor negatively influences its binding to chromatin
Ketan Thakar1, Rainer Niedenthal2, Elwy Okaz1
1Department of Biochemistry, Centre for Biomolecular Interactions Bremen (CBIB), University of Bremen, Germany.
Abstract:
Hepatoma-derived growth factor is a nuclear targeted mitogen containing a PWWP domain that mediates binding to DNA. To date, almost nothing is known about the molecular mechanisms of the functions of hepatoma-derived growth factor, its routes of secretion and internalization or post-translational modifications. In the present study, we show for the first time that hepatoma-derived growth factor is modified by the covalent attachment of small ubiquitin-related modifier 1 (SUMO-1), a post-translational modification with regulatory functions for an increasing number of proteins. Using a basal SUMOylation system in Escherichia coli followed by a MALDI-TOF-MS based peptide analysis, we identified the lysine residue SUMOylated located in the N-terminal part of the protein adjacent to the PWWP domain. Surprisingly, this lysine residue is not part of the consensus motif described for SUMOylation. With a series of hepatoma-derived growth factor mutants, we then confirmed that this unusual location is also used in mammalian cells and that SUMOylation of hepatoma-derived growth factor takes place in the nucleus. Finally, we demonstrate that SUMOylated hepatoma-derived growth factor is not binding to chromatin, in contrast to its unSUMOylated form. These observations potentially provide new perspectives for a better understanding of the functions of hepatoma-derived growth factor.
Insights
Hepatoma-derived growth factor (HDGF) is SUMO-1 modified, impacting its nuclear function. This study identifies a novel SUMOylation site on HDGF, revealing SUMOylated HDGF does not bind chromatin.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Hepatoma-derived growth factor (HDGF) is a nuclear-targeted mitogen with a DNA-binding PWWP domain.
- The molecular mechanisms, secretion, internalization, and post-translational modifications of HDGF remain largely unknown.
Purpose of the Study:
- To investigate the post-translational modifications of HDGF.
- To identify the specific modification and its functional consequences on HDGF.
Main Methods:
- SUMOylation assay in Escherichia coli.
- MALDI-TOF-MS peptide analysis to identify SUMOylation site.
- Site-directed mutagenesis in mammalian cells.
- Chromatin binding assays.
Main Results:
- HDGF is covalently modified by small ubiquitin-related modifier 1 (SUMO-1).
- A novel SUMOylation site was identified at a lysine residue near the PWWP domain, outside the consensus motif.
- SUMOylation of HDGF occurs in the nucleus in mammalian cells.
- SUMOylated HDGF exhibits reduced binding to chromatin compared to its unSUMOylated form.
Conclusions:
- This study reveals SUMO-1ylation as a novel post-translational modification of HDGF.
- The identified SUMOylation site and its nuclear localization provide new insights into HDGF regulation.
- SUMO-1ylation of HDGF affects its interaction with chromatin, potentially altering its functions.
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