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Updated: May 31, 2026

Bacterial Delivery of RNAi Effectors: Transkingdom RNAi
Published on: August 19, 2010
Sequence- and target-independent angiogenesis suppression by siRNA via TLR3
Mark E Kleinman1, Kiyoshi Yamada, Atsunobu Takeda
1Department of Ophthalmology, University of Kentucky, Lexington, Kentucky 40506, USA.
Abstract:
Clinical trials of small interfering RNA (siRNA) targeting vascular endothelial growth factor-A (VEGFA) or its receptor VEGFR1 (also called FLT1), in patients with blinding choroidal neovascularization (CNV) from age-related macular degeneration, are premised on gene silencing by means of intracellular RNA interference (RNAi). We show instead that CNV inhibition is a siRNA-class effect: 21-nucleotide or longer siRNAs targeting non-mammalian genes, non-expressed genes, non-genomic sequences, pro- and anti-angiogenic genes, and RNAi-incompetent siRNAs all suppressed CNV in mice comparably to siRNAs targeting Vegfa or Vegfr1 without off-target RNAi or interferon-alpha/beta activation. Non-targeted (against non-mammalian genes) and targeted (against Vegfa or Vegfr1) siRNA suppressed CNV via cell-surface toll-like receptor 3 (TLR3), its adaptor TRIF, and induction of interferon-gamma and interleukin-12. Non-targeted siRNA suppressed dermal neovascularization in mice as effectively as Vegfa siRNA. siRNA-induced inhibition of neovascularization required a minimum length of 21 nucleotides, a bridging necessity in a modelled 2:1 TLR3-RNA complex. Choroidal endothelial cells from people expressing the TLR3 coding variant 412FF were refractory to extracellular siRNA-induced cytotoxicity, facilitating individualized pharmacogenetic therapy. Multiple human endothelial cell types expressed surface TLR3, indicating that generic siRNAs might treat angiogenic disorders that affect 8% of the world's population, and that siRNAs might induce unanticipated vascular or immune effects.
Insights
Small interfering RNA (siRNA) inhibits choroidal neovascularization (CNV) through toll-like receptor 3 (TLR3), not gene silencing. This discovery suggests generic siRNAs could treat angiogenic disorders by activating TLR3, independent of targeting specific genes.
Area of Science:
- Molecular Biology
- Immunology
- Ophthalmology
Background:
- Current clinical trials for blinding choroidal neovascularization (CNV) use small interfering RNA (siRNA) targeting vascular endothelial growth factor-A (VEGFA) or its receptor VEGFR1, relying on intracellular RNA interference (RNAi).
- The efficacy of siRNA in these trials is presumed to be due to specific gene silencing of VEGFA or VEGFR1.
Purpose of the Study:
- To investigate the mechanism by which siRNA inhibits CNV.
- To determine if siRNA's effect on CNV is dependent on targeting specific genes like Vegfa or Vegfr1.
- To explore alternative pathways for siRNA-mediated inhibition of neovascularization.
Main Methods:
- Administered various siRNAs (targeting non-mammalian genes, non-expressed genes, non-genomic sequences, RNAi-incompetent sequences) to mice with CNV.
- Assessed CNV suppression and compared it to siRNAs targeting Vegfa or Vegfr1.
- Investigated the role of cell-surface toll-like receptor 3 (TLR3), its adaptor TRIF, and induced cytokines (interferon-gamma, interleukin-12) in siRNA-mediated CNV inhibition.
- Evaluated siRNA's effect on dermal neovascularization.
- Determined the minimum siRNA length required for neovascularization inhibition.
- Examined the expression of surface TLR3 in human endothelial cells and the effect of a TLR3 variant (412FF) on siRNA-induced cytotoxicity.
Main Results:
- siRNA-mediated CNV inhibition was observed with various non-specific and RNAi-incompetent siRNAs, comparable to Vegfa/Vegfr1-targeted siRNAs.
- CNV suppression was mediated by cell-surface TLR3, TRIF, and induction of interferon-gamma and interleukin-12, independent of off-target RNAi or interferon-alpha/beta activation.
- siRNA-induced inhibition of neovascularization required a minimum length of 21 nucleotides, suggesting a direct interaction with TLR3.
- Non-targeted siRNA effectively suppressed dermal neovascularization.
- Human endothelial cells express surface TLR3, and a specific TLR3 variant (412FF) conferred refractoriness to siRNA-induced cytotoxicity.
Conclusions:
- CNV inhibition by siRNA is a class effect mediated by cell-surface TLR3 activation, not intracellular RNA interference targeting specific genes.
- Generic siRNAs, by activating TLR3, may offer a therapeutic strategy for angiogenic disorders.
- The findings suggest potential for individualized pharmacogenetic therapy based on TLR3 variants and highlight the possibility of unanticipated vascular or immune effects from siRNA treatments.
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