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Genome-wide Screen for miRNA Targets Using the MISSION Target ID Library
Published on: April 6, 2012
MicroRNA-21 promotes cell transformation by targeting the programmed cell death 4 gene
1Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, KY 40202, USA.
Abstract:
MicroRNAs (miRNAs) are small noncoding RNA molecules that negatively control expression of target genes in animals and plants. The microRNA-21 gene (mir-21) has been identified as the only miRNA commonly overexpressed in solid tumors of the lung, breast, stomach, prostate, colon, brain, head and neck, esophagus and pancreas. We initiated a screen to identify miR-21 target genes using a reporter assay and identified a potential miR-21 target in the 3'-UTR of the programmed cell death 4 (PDCD4) gene. We cloned the full-length 3'-UTR of human PDCD4 downstream of a reporter and found that mir-21 downregulated, whereas a modified antisense RNA to miR-21 upregulated reporter activity. Moreover, deletion of the putative miR-21-binding site (miRNA regulatory element, MRE) from the 3'-UTR of PDCD4, or mutations in the MRE abolished the ability of miR-21 to inhibit reporter activity, indicating that this MRE is a critical regulatory region. Western blotting showed that Pdcd4 protein levels were reduced by miR-21 in human and mouse cells, whereas quantitative real-time PCR revealed little difference at the mRNA level, suggesting translational regulation. Finally, overexpression of mir-21 in MCF-7 human breast cancer cells and mouse epidermal JB6 cells promoted soft agar colony formation by downregulating Pdcd4 protein levels. The demonstration that miR-21 promotes cell transformation supports the concept that mir-21 functions as an oncogene by a mechanism that involves translational repression of the tumor suppressor Pdcd4.
Insights
MicroRNA-21 (miR-21) is overexpressed in many cancers. This study shows miR-21 promotes cell transformation by downregulating the tumor suppressor Pdcd4 protein, acting as an oncogene.
Area of Science:
- Molecular Biology
- Oncology
- Gene Regulation
Background:
- MicroRNAs (miRNAs) are small noncoding RNAs regulating gene expression.
- microRNA-21 (miR-21) is frequently overexpressed in various solid tumors.
- The role of miR-21 in cancer progression is under investigation.
Purpose of the Study:
- To identify miR-21 target genes.
- To investigate the mechanism by which miR-21 influences cell transformation.
- To determine if miR-21 functions as an oncogene.
Main Methods:
- Reporter assays to identify miR-21 targets in the PDCD4 3'-UTR.
- Western blotting and quantitative real-time PCR to assess protein and mRNA levels.
- Cell transformation assays (soft agar colony formation) in cancer and mouse cells.
Main Results:
- miR-21 directly targets the programmed cell death 4 (PDCD4) gene's 3'-UTR.
- miR-21 downregulates PDCD4 protein levels, with minimal effect on mRNA.
- Overexpression of miR-21 promotes cell transformation by inhibiting PDCD4.
Conclusions:
- miR-21 acts as an oncogene by translationally repressing the tumor suppressor PDCD4.
- miR-21's role in promoting cell transformation is mediated through PDCD4 downregulation.
- These findings highlight miR-21 as a potential therapeutic target in cancer.
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