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Updated: Jul 6, 2026

Employing Digital Droplet PCR to Detect BRAF V600E Mutations in Formalin-fixed Paraffin-embedded Reference Standard Cell Lines
Published on: October 8, 2015
BRAFV600E mutation is associated with preferential sensitivity to mitogen-activated protein kinase kinase inhibition
Rebecca Leboeuf1, Jacqueline E Baumgartner, Miriam Benezra
1Department of Medicine and Human Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY 10021, USA.
Context:
Mutually exclusive mutations of RET, RAS, or BRAF are present in about 70% of papillary thyroid carcinomas, whereas only the latter two are seen in poorly differentiated and anaplastic cancers. Although the signal output common to these oncoproteins is ERK, a recent report showed that only BRAF mutations consistently predicted responsiveness to MAPK kinase (MEK) inhibitors.
Objectives:
Here we investigated whether sensitivity to MEK inhibition was determined by oncogene status in 13 human thyroid cancer cell lines: four with BRAF mutations, four RAS, one RET/PTC1, and four wild type.
Results:
Growth of BRAF (+) cells was inhibited by the MEK antagonist PD0325901 with an IC(50) of less than 5 nm. By contrast, RAS, RET/PTC1, or wild-type cells had IC(50) of 4 nm to greater than 1000 nm. Sensitivity was not predicted by coexisting mutations in PIK3CA or by PTEN status. Similar effects were obtained with the MEK inhibitor AZD6244. PD0325901 induced a sustained G1/S arrest in BRAF (+) but not BRAF (-) lines. PD0325901 was equipotent at inhibiting pERK1/2 after 2 h, regardless of genetic background, but pERK rebounded at 24 h in most lines. MEK inhibitor resistance was associated with partial refractoriness of pERK to further inhibition by the compounds. AZD6244 was more potent at inhibiting growth of NPA (BRAF +) than Cal62 (KRAS +) xenografts.
Conclusion:
Thyroid cancers with BRAF mutation are preferentially sensitive to MEK inhibitors, whereas tumors with other MEK-ERK effector pathway gene mutations have variable responses, either because they are only partially dependent on ERK and/or because feedback responses elicit partial refractoriness to MEK inhibition.
Insights
Papillary thyroid cancers with BRAF mutations are highly sensitive to MEK inhibitors. Other oncogene mutations show variable responses to MEK inhibition due to ERK pathway feedback.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genetics
Background:
- Papillary thyroid carcinomas often harbor mutually exclusive RET, RAS, or BRAF mutations.
- BRAF mutations are common in thyroid cancers, influencing signaling pathways like ERK.
- Previous studies suggested BRAF mutations predict response to MAPK kinase (MEK) inhibitors.
Purpose of the Study:
- To investigate if MEK inhibitor sensitivity in thyroid cancer cell lines correlates with specific oncogene status (BRAF, RAS, RET/PTC1).
- To evaluate the impact of oncogene mutations on thyroid cancer cell line response to MEK inhibition.
Main Methods:
- Testing 13 human thyroid cancer cell lines with varying mutations (BRAF, RAS, RET/PTC1, wild-type) against MEK inhibitors PD0325901 and AZD6244.
- Assessing cell growth inhibition (IC50), cell cycle arrest (G1/S), and phosphorylation of ERK (pERK).
- Evaluating xenograft models to confirm in vitro findings.
Main Results:
- BRAF-mutated cell lines showed significant growth inhibition (IC50 < 5 nm) with PD0325901, unlike RAS, RET/PTC1, or wild-type lines (IC50 4 nm to >1000 nm).
- PD0325901 induced G1/S arrest in BRAF-mutated cells; pERK rebound occurred at 24 hours in most lines, indicating resistance mechanisms.
- MEK inhibitor resistance was linked to partial refractoriness of pERK to inhibition; AZD6244 demonstrated greater potency against BRAF-mutated xenografts.
Conclusions:
- Thyroid cancers with BRAF mutations are preferentially sensitive to MEK inhibitors.
- Tumors with other MEK-ERK pathway mutations exhibit variable responses to MEK inhibitors.
- Feedback mechanisms and partial ERK pathway dependency contribute to MEK inhibitor resistance.
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