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Updated: Jul 6, 2026

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
Published on: June 11, 2015
Multifunctional roles of a bacteriophage phi 29 morphogenetic factor in assembly and infection
Daniel N Cohen1, Stephen E Erickson, Ye Xiang
1Department of Microbiology, University of Minnesota Medical School, University of Minnesota, Minneapolis, MN 55455, USA.
Abstract:
Low copy number proteins within macromolecular complexes, such as viruses, can be critical to biological function while comprising a minimal mass fraction of the complex. The Bacillus subtilis double-stranded DNA bacteriophage phi 29 gene 13 product (gp13), previously undetected in the virion, was identified and localized to the distal tip of the tail knob. Western blots and immuno-electron microscopy detected a few copies of gp13 in phi 29, DNA-free particles, purified tails, and defective particles produced in suppressor-sensitive (sus) mutant sus13(330) infections. Particles assembled in the absence of intact gp13 (sus13(342) and sus13(330)) had the gross morphology of phi 29 but were not infectious. gp13 has predicted structural homology and sequence similarity to the M23 metalloprotease LytM. Poised at the tip of the phi 29 tail knob, gp13 may serve as a plug to help restrain the highly pressurized packaged genome. Also, in this position, gp13 may be the first virion protein to contact the cell wall in infection, acting as a pilot protein to depolymerize the cell wall. gp13 may facilitate juxtaposition of the tail knob onto the cytoplasmic membrane and the triggering of genome injection.
Insights
The Bacillus subtilis bacteriophage phi 29 gene 13 product (gp13), a low copy number protein, was identified in the virion. This protein is crucial for phi 29 infectivity, likely acting as a pilot protein during cell wall penetration.
Area of Science:
- Virology
- Structural Biology
- Bacteriophage Research
Background:
- Low copy number proteins are vital for macromolecular complex function, despite their small mass fraction.
- The Bacillus subtilis bacteriophage phi 29 gene 13 product (gp13) was previously undetected in the virion.
Purpose of the Study:
- To identify and localize the previously undetected gp13 within the phi 29 virion.
- To investigate the role of gp13 in phi 29 particle assembly and infectivity.
Main Methods:
- Western blots and immuno-electron microscopy were used to detect and localize gp13.
- Analysis of phi 29 particles, DNA-free particles, purified tails, and defective particles from suppressor-sensitive mutants.
Main Results:
- gp13 was identified and localized to the distal tip of the phi 29 tail knob.
- Few copies of gp13 were detected in various phi 29 particle preparations.
- Particles lacking intact gp13 (sus13(342) and sus13(330)) were morphologically similar to wild-type phi 29 but non-infectious.
Conclusions:
- gp13 is essential for phi 29 infectivity and is located at a strategic position on the tail knob.
- gp13's predicted homology to metalloproteases suggests a role in cell wall depolymerization as a pilot protein.
- gp13 may function as a genome restraint plug and facilitate host cell membrane interaction for genome injection.
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