Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Phase II Conjugation Reactions: Overview01:14

Phase II Conjugation Reactions: Overview

Conjugation, a key component of phase II biotransformation reactions, is a vital process in drug detoxification. It involves transferring endogenous substances like glucuronic acid, sulfate, and glycine to drugs or their metabolites formed in phase I reactions. These conjugation reactions, often catalyzed by specific enzymes, transform potentially harmful metabolites into inactive, water-soluble forms easily excreted in urine or bile. By enhancing polarity and eliminating pharmacological...
Labeling DNA Probes03:31

Labeling DNA Probes

DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
Conjugated Proteins02:50

Conjugated Proteins

Simple proteins and protein complexes contain only amino acids. In contrast, many other proteins, called conjugated proteins, covalently bond with non-protein moieties.
Nucleoproteins are protein complexes that contain nucleic acids, categorized as deoxyribonucleoproteins (DNPs) or ribonucleoproteins (RNPs) respectively. The nucleosome is a typical example of a DNP where nuclear DNA is associated with histone proteins. The major antigen for the Covid-19 virus SARS-CoV is an RNP that is critical...
Drug Metabolism: Phase II Reactions01:14

Drug Metabolism: Phase II Reactions

Phase II reactions are essential for the detoxification and elimination of drugs from the body. These reactions involve the conjugation of parent drugs or their phase I metabolites with endogenous molecules, resulting in more hydrophilic drug conjugates. The primary conjugation reactions in this phase are sulfation and glucuronidation. Both sulfation and glucuronidation typically produce biologically inactive metabolites. However, in some cases involving prodrugs, active metabolites may be...
Phosphodiester Linkages01:01

Phosphodiester Linkages

Overview
Phosphodiester bond forms when a phosphoric acid molecule (H3PO4) links with two hydroxyl groups (–OH) of two other molecules, forming two ester bonds. Two water molecules are released in this process. The phosphodiester bond is commonly found in nucleic acids (DNA and RNA) and plays a critical role in their structure and function.
Phosphodiester Bonds Link Nucleotides Together
DNA and RNA are polynucleotides or long chains of nucleotides that are linked together. A nucleotide is...
Nucleic Acid Structure01:25

Nucleic Acid Structure

The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA has a double-helix structure. The...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

A tetramethyl rhodamine (Tamra) phosphoramidite facilitates solid-phase-supported synthesis of 5'-Tamra DNA.

The Journal of organic chemistry·2001
Same author

A phosphate bound universal linker for DNA synthesis.

Nucleosides & nucleotides·1999
Same author

Versatile linker chemistry for synthesis of 3'-modified DNA.

Bioconjugate chemistry·1997
Same author

A new universal linker for solid phase DNA synthesis.

Nucleic acids research·1996
Same author

Design, synthesis, and evaluation of latent alkylating agents activated by glutathione S-transferase.

Journal of medicinal chemistry·1996
Same author

Salt-induced immobilizations of DNA oligonucleotides on an epoxide-activated high-performance liquid chromatographic affinity support.

Journal of chromatography. A·1996
Same journal

Synthesis of Unmodified Oligonucleotides.

Current protocols in nucleic acid chemistry·2022
Same journal

Biophysical Analysis of Nucleic Acids.

Current protocols in nucleic acid chemistry·2022
Same journal

RNA Folding Pathways.

Current protocols in nucleic acid chemistry·2022
Same journal

Nucleic Acid Binding Molecules.

Current protocols in nucleic acid chemistry·2022
Same journal

Biologically Active Nucleosides.

Current protocols in nucleic acid chemistry·2020
Same journal

Biologically Active Nucleosides.

Current protocols in nucleic acid chemistry·2020
See all related articles

Related Experiment Video

Updated: Jul 5, 2026

Nucleoside Triphosphates - From Synthesis to Biochemical Characterization
15:22

Nucleoside Triphosphates - From Synthesis to Biochemical Characterization

Published on: April 3, 2014

3'-modified oligonucleotides and their conjugates.

M H Lyttle1

  • 1Biosearch Technologies, Inc., Novato, California, USA.

Current Protocols in Nucleic Acid Chemistry
|April 23, 2008
PubMed
Summary
This summary is machine-generated.

New solid supports for DNA synthesis enable attachment of reporter groups and enhance cell membrane permeability for antisense drug development. These methods detail synthesis, characterization, and conjugation.

More Related Videos

Using Modified Synthetic Oligonucleotides to Assay Nucleic Acid-Metabolizing Enzymes
05:33

Using Modified Synthetic Oligonucleotides to Assay Nucleic Acid-Metabolizing Enzymes

Published on: July 5, 2024

Regioselective O-Glycosylation of Nucleosides via the Temporary 2',3'-Diol Protection by a Boronic Ester for the Synthesis of Disaccharide Nucleosides
08:46

Regioselective O-Glycosylation of Nucleosides via the Temporary 2',3'-Diol Protection by a Boronic Ester for the Synthesis of Disaccharide Nucleosides

Published on: July 26, 2018

Related Experiment Videos

Last Updated: Jul 5, 2026

Nucleoside Triphosphates - From Synthesis to Biochemical Characterization
15:22

Nucleoside Triphosphates - From Synthesis to Biochemical Characterization

Published on: April 3, 2014

Using Modified Synthetic Oligonucleotides to Assay Nucleic Acid-Metabolizing Enzymes
05:33

Using Modified Synthetic Oligonucleotides to Assay Nucleic Acid-Metabolizing Enzymes

Published on: July 5, 2024

Regioselective O-Glycosylation of Nucleosides via the Temporary 2',3'-Diol Protection by a Boronic Ester for the Synthesis of Disaccharide Nucleosides
08:46

Regioselective O-Glycosylation of Nucleosides via the Temporary 2',3'-Diol Protection by a Boronic Ester for the Synthesis of Disaccharide Nucleosides

Published on: July 26, 2018

Area of Science:

  • Oligonucleotide chemistry
  • Medicinal chemistry
  • Bioconjugation

Background:

  • Solid-phase synthesis is crucial for creating modified oligonucleotides.
  • Developing antisense drugs requires efficient delivery and labeling strategies.
  • Functionalizing DNA at the 3' position is key for various applications.

Purpose of the Study:

  • To describe the solid-phase synthesis of novel 3'-modified DNA supports.
  • To enable the attachment of diverse reporter groups and improve drug delivery.
  • To provide detailed protocols for synthesis, characterization, and conjugation.

Main Methods:

  • Solid-phase organic synthesis of 3'-aminoalkyl, 3'-thioalkyl, and 3'-polyethyleneglycol supports.
  • Standard DNA synthesis, purification, and characterization techniques.
  • Conjugation chemistry for attaching reporter molecules and functional groups.

Main Results:

  • Successful synthesis of three distinct 3'-modified solid supports.
  • Demonstrated utility of aminoalkyl and thioalkyl supports for reporter group attachment.
  • Highlighted the role of polyethyleneglycol supports in enhancing cell membrane permeability for antisense applications.

Conclusions:

  • The described methods provide versatile tools for creating functionalized DNA.
  • These modified supports are valuable for developing advanced diagnostics and therapeutics, particularly antisense drugs.
  • The protocols facilitate the integration of modified oligonucleotides into various biological applications.