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Related Concept Videos

Nucleosome Remodeling02:54

Nucleosome Remodeling

Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Chromatin Modification in iPS Cells01:32

Chromatin Modification in iPS Cells

Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Duplication of Chromatin Structure02:05

Duplication of Chromatin Structure

The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer is an enzyme that can...
Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
Histone Modification02:32

Histone Modification

The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...

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Deciphering Molecular Mechanism of Histone Assembly by DNA Curtain Technique
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Chromatin remodelling and actin organisation.

Ann-Kristin Ostlund Farrants1

  • 1Department of Cell Biology, The Wenner-Gren Institute, The Arrhenius Laboratories F4, Stockholm University, SE-106 91 Stockholm, Sweden. anki.ostlund@cellbio.su.se

FEBS Letters
|April 30, 2008
PubMed
Summary

ATP-dependent chromatin remodelling complexes, including SWI/SNF, utilize ATP to alter DNA-histone contacts. Actin and related proteins are key subunits, crucial for complex stability and chromatin recruitment.

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Area of Science:

  • Molecular Biology
  • Cell Biology
  • Biochemistry

Background:

  • Chromatin remodelling is essential for nuclear processes.
  • ATP-dependent chromatin remodelling complexes are large, multiprotein machines.
  • These complexes use ATP to modify DNA-histone interactions.

Purpose of the Study:

  • To elucidate the role of ATP-dependent chromatin remodelling complexes.
  • To understand the function of actin and actin-related proteins within these complexes.
  • To investigate the involvement of SWI/SNF complexes in transcriptional regulation.

Main Methods:

  • Classification of ATP-dependent chromatin remodelling complexes based on ATPase subunit.
  • Analysis of SWI/SNF complex involvement in transcriptional regulation and cellular processes.
  • Investigation of actin and actin-related proteins as subunits in SWI/SNF and INO80 complexes.

Main Results:

  • ATP-dependent complexes are categorized into 4 subfamilies.
  • SWI/SNF complexes regulate transcription, actin filament formation, and genes for cell adhesion and extracellular matrix proteins.
  • Actin and actin-related proteins are integral to SWI/SNF and INO80 complexes, contributing to stability and chromatin recruitment.

Conclusions:

  • Actin and actin-related proteins play vital, though not fully understood, roles in chromatin remodelling complexes.
  • These proteins are critical for maintaining complex stability and facilitating chromatin targeting.
  • SWI/SNF complexes are key regulators of gene expression and cellular functions involving actin dynamics.